Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00772 ATGGTTTTTCGTGGTCCTCTATACTTGTTTTTAGTTCTTATAGTTTTTTCCCTCATTTTCAACCTGACTTTTGCAAAGCAATCAAAGATAAATGGTTTGAAAATGAATGTAATTGATCGATGTTGGAGACTGGATCCTGAATGGAGGAGACATCGATCTCAATTGGCCACATGTTCCATTGGCTATGCTGGCAAGATGATAAACAACATCCATAATGACCTTATTCACTATATTGTTACTGACTCTGGTGATGATCCTGTAAATCCCAAACCCAACACCTTGAGGTACGGAACTTCTATTGTTCAAGGAAAAGTGTGGATCACATTCCAAAAAGACATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATTGCTAATAATGCTTGTTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCCCCAGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTTCTTTAGGTCATGTAGACGGGGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTACTCGATGTAACACGTGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGACGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAATTTACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCCGAGTCTCAAAAGTGA 897 0.3902 MVFRGPLYLFLVLIVFSLIFNLTFAKQSKINGLKMNVIDRCWRLDPEWRRHRSQLATCSIGYAGKMINNIHNDLIHYIVTDSGDDPVNPKPNTLRYGTSIVQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVISLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVIYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPESQK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00772 298 SUPERFAMILY Pectin lyase-like 29 294 IPR011050 -
Lapu4g00772 298 SMART amb_all 112 298 IPR002022 -
Lapu4g00772 298 Gene3D - 35 296 IPR012334 -
Lapu4g00772 298 PRINTS Pollen allergen Amb family signature 286 298 IPR018082 -
Lapu4g00772 298 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Lapu4g00772 298 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Lapu4g00772 298 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Lapu4g00772 298 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Lapu4g00772 298 PANTHER PECTATE LYASE 18-RELATED 33 295 IPR045032 GO:0030570
Lapu4g00772 298 Pfam Pectate lyase 123 288 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00772 Lapu-Chr4 18551873 18553369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00772 66 295 Polysaccharide Lyase AT5G09280 70.000 2.65e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00772 K01728 - gmx:100780437 518.464