Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00769 GGAACTTCTATTGTTCAAGGAAAAGTGTGGATCACATTCCAAAAAGACATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATTGCTAATAATGCTTGTTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCCCCAGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTTCTTTAGGTCATGTAGACGGGGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTACTCGATGTAACACGTGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGACGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAATTTACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCCAGTCTCAAAAGTGAAGCTAACCTCTTCGTAGCACCAACAATAGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTGATAAAAATAAAGATAGATGGGATTTTCAGTCGGTGAGGGACATTTTTGAAAATGGAGCTTCCTTT 735 0.3932 GTSIVQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVISLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVIYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKNKDRWDFQSVRDIFENGASF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00769 245 PRINTS Pollen allergen Amb family signature 230 245 IPR018082 -
Lapu4g00769 245 PRINTS Pollen allergen Amb family signature 24 40 IPR018082 -
Lapu4g00769 245 PRINTS Pollen allergen Amb family signature 190 209 IPR018082 -
Lapu4g00769 245 PRINTS Pollen allergen Amb family signature 88 109 IPR018082 -
Lapu4g00769 245 PRINTS Pollen allergen Amb family signature 168 187 IPR018082 -
Lapu4g00769 245 SMART amb_all 16 213 IPR002022 -
Lapu4g00769 245 Pfam Pectate lyase 27 207 IPR002022 -
Lapu4g00769 245 Gene3D - 2 245 IPR012334 -
Lapu4g00769 245 PANTHER PECTATE LYASE 18-RELATED 6 245 IPR045032 GO:0030570
Lapu4g00769 245 SUPERFAMILY Pectin lyase-like 7 244 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00769 Lapu-Chr4 18528820 18529885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00769 1 217 Polysaccharide Lyase AT5G09280 71.429 1.36e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00769 K01728 - gmx:100780437 463.381