Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00768 ATGGGTTTTCCTGGTCCTCTATACTTGTTTTTAGTTCTTATAATTTTCTCTCTCATTTCCAACCTGACTTTTGCAAAGCAATCAAAGATAAATGGTTTGAAAATGAATGTAATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGACACCGATCTCAATTGGCCACATGTTCCGTTGGGTATGCTGGCAAGATGATAAACAACATCGATAATGACCTTATTCACTATATTGTTACTGACTCTAGTGATGATCCTGTAAATCCCAAACCCAACACCTTGAGGTACGGAACTTCTATTGTTCAAGGAAAAGTGTGGATCACATTCCAAAAAGACATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATTGCTAATAATGCTTGTTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCCCCTGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTTTTGTAGGTCATGTAGACGGGGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTACTCGATGTAACACGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAGTGTACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCCAGTCTCAAAAGTGAAGCTAACCTCTTCGTAGCACCAACAATAGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTGATAAAAATAGAGATAGATGGGATTTTCAATCAGTGAGGGACATTTTTGAAAATGGAGCTACTTTTGATGTAACAAAAGGAGGAGATGTGCAAAAACCAAATTATACCAAGGAACAAAATTTCAAAGTTATTCATGCCAAATTTGTGAGATCGTTGACACGTTCATCGGGTGTGCAACGAATGTTATAA 1146 0.3866 MGFPGPLYLFLVLIIFSLISNLTFAKQSKINGLKMNVIDRCWRLNPEWRRHRSQLATCSVGYAGKMINNIDNDLIHYIVTDSSDDPVNPKPNTLRYGTSIVQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIFVGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKNRDRWDFQSVRDIFENGATFDVTKGGDVQKPNYTKEQNFKVIHAKFVRSLTRSSGVQRML* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00768 381 Pfam Pectate lyase 123 303 IPR002022 -
Lapu4g00768 381 PANTHER PECTATE LYASE 18-RELATED 33 377 IPR045032 GO:0030570
Lapu4g00768 381 Gene3D - 35 378 IPR012334 -
Lapu4g00768 381 SUPERFAMILY Pectin lyase-like 24 352 IPR011050 -
Lapu4g00768 381 SMART amb_all 112 309 IPR002022 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Lapu4g00768 381 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00768 Lapu-Chr4 18524148 18525642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00768 66 313 Polysaccharide Lyase AT5G09280 70.161 5.48e-139 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00768 K01728 - gmx:100780437 645.58