Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00767 ATGGTTTTTCGTGGTCCTCTATACTTGTTTTTAGTTCTTATAGTTTTCTCCCTCATTTCCAACCTGACTTTTGCAAAGCAATCAAAGATAAATGGTTTGAAAATAAATGTAATTGATCGATGTTGGAGACTGGATCCTGAATGGAGGAGACACCGATCTCAATTGGCCACATGTTCCATTGGCTATGCTGGCAAGATGATAAACAACATCAGTAATGACCTTATTCACTATATTGTTACTGACTCTGGTGATGATCCTATAAATCTCAAACCCAACACCTTGAGGTACGGAACTTCTATTGTTCAAGAAAAAGTGTGGATCACATTCCAAAAAGATATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATTGCTAATAATGCTTGTTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGGCCCTGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTTCTTTAGGTCATGTAGACGGGAATGCAATAAGATTGGTTACCTCTTCAAAGATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTACTCAATGTAACACGTGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATATGAGAGACCAAAACATGAAAGTTACTGTAGTGTACAATCACTTTGGACCTAATTATAATCAATGCATGCCAAGGTAA 804 0.3769 MVFRGPLYLFLVLIVFSLISNLTFAKQSKINGLKINVIDRCWRLDPEWRRHRSQLATCSIGYAGKMINNISNDLIHYIVTDSGDDPINLKPNTLRYGTSIVQEKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQGPGIVMGPEGKVISLGHVDGNAIRLVTSSKIWIDHNTLYDCQDGLLNVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVVYNHFGPNYNQCMPR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00767 267 Gene3D - 35 267 IPR012334 -
Lapu4g00767 267 PANTHER PECTATE LYASE 18-RELATED 33 267 IPR045032 GO:0030570
Lapu4g00767 267 SMART amb_all 112 267 IPR002022 -
Lapu4g00767 267 Pfam Pectate lyase 123 257 IPR002022 -
Lapu4g00767 267 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Lapu4g00767 267 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Lapu4g00767 267 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Lapu4g00767 267 SUPERFAMILY Pectin lyase-like 36 267 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00767 Lapu-Chr4 18499890 18500806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00767 66 267 Polysaccharide Lyase AT5G09280 65.347 1.60e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00767 K01728 - gmx:100780437 450.669