Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00766 ATGGCTTTTCCCGGTCCTTTATACTTGTTTTTAGTTCTTATAGTTTTCTCTCTCATTTCCAACCTGACTTTTGCAAAGCAATCAAAGATAAATGGTTTGAAAATGAATGTAATTGATCGATGTTGGAGATTGGATTCTGAATGGAGGAGACACCGATCTCAATTGGCCACATGTTCCGTTGGCTACGCTGGCAAGATGATAAACAACATCGGTAATGACCTTATTCACTATATTGTTACTGACTCTAGTGATGATCCTATAAATCCCAAACCCAACACATTGAGGTACGAAACTTCTATTATTCAAGGAAAAGTGTGGATCACATTTGAAAAGGACATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGCTCTACCACCATTGATGATCGAGGTGTTAATGTCCACATTGCTAATAATTCTTGTTTGATGATCTTCAAGGCCACCAACATAATCATCCATGACATTCGAGTTCATCATTGCAAACCTCAAGCTCCTGGGATTGTAATGGGGCCTAAAGGAAAGGTGATTTCGTTAGGTTATGTAGACGGGGATGCAATAAGATTGGTTACAGCTTCAAAGATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTACTCGATCTAACACGAGGTTCTACTGATGTGACTATCTCCAACAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGACGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAATGTACAATCACTTTGGACCTAATTGTAATCAACGTATGTCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCATCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTATAGCACCAACAATAGGGAATAAAGAA 936 0.3814 MAFPGPLYLFLVLIVFSLISNLTFAKQSKINGLKMNVIDRCWRLDSEWRRHRSQLATCSVGYAGKMINNIGNDLIHYIVTDSSDDPINPKPNTLRYETSIIQGKVWITFEKDMLITLEKPLLISSSTTIDDRGVNVHIANNSCLMIFKATNIIIHDIRVHHCKPQAPGIVMGPKGKVISLGYVDGDAIRLVTASKIWIDHNTLYDCQDGLLDLTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVMYNHFGPNCNQRMSRIRHGYAHVANNFYQGWHQYAIGGSMEPSLKSEANLFIAPTIGNKE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00766 312 SMART amb_all 112 309 IPR002022 -
Lapu4g00766 312 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Lapu4g00766 312 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Lapu4g00766 312 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Lapu4g00766 312 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Lapu4g00766 312 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Lapu4g00766 312 Pfam Pectate lyase 124 303 IPR002022 -
Lapu4g00766 312 Gene3D - 35 312 IPR012334 -
Lapu4g00766 312 PANTHER PECTATE LYASE 18-RELATED 33 312 IPR045032 GO:0030570
Lapu4g00766 312 SUPERFAMILY Pectin lyase-like 35 307 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00766 Lapu-Chr4 18482209 18483344 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00766 66 312 Polysaccharide Lyase AT5G09280 66.397 1.22e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00766 K01728 - gmx:100780437 532.332