Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00749 ATGAAACTGGTGCCGTCAGACATTGCGGCCAATGTCTGTTCTCAGCAATCTGAGGACGGGAATGAGAGCCACACTCCTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTCTACTATTGTCCCCACATAAAAAATTTCCCTTATGGATACTTTACATGTGGAGATTTTATCACTTATTTTGCACTGGAATATGATAATCTGTTCATTAATTATCCACAACTTCGAAGGTGCAAGCGAAGTTTACACACGTGGACTGATGCTCAAATGAATTTATCTGGTGGAGCTCTTGGTTTGGAAAAAGTTCTCAATGAAGGGTTTGTGGTAAAGTATAATGTTTCTCAACATTGCGCAAGATGCTTGGGAAGTGAAGGGCGTTGCTGGAGAGATGGTTCTGAAAACCATGTAGTGAACTCATGCTACTACTGCTTGAATGGATCTCATGGCCAACACTGTTCTCCTAGTCCTCCCAAAACCAGCACAAAAAGTGCTGTCGCAGTCGCAGGCAAAAAATGGAACAAAAAGATGAAATTCATTATTATAGGTGCTGTCATTGCAATTGTGTTGATATGTATAGCAATTTTCTGTCAAAGATACAAGTCATCAATCTTGCAAGGACATTTTGGGTTGACTTCAAAGATGAACAGAAATATTGAAGCATTTCTTAAAAATCATGGAGCTCAAACTCTGAAAAGATACAAATTTTCAGAAGTAAGAAAAATGACCAGCTCCTTCAAAATTAAACTGGGTGAAGGTAGTTTTGGTGCTGTATACAAAGGAGAGATACTCAATGCTTGTCCTGTGGCTATAAAGAAATTGAATGCATCCAAAGGAAATGGTGAAGACTTTATCAATGAAGTTGCTAGTATTAGTAGAACTTCTCATGTTAATGTTGTTCAACTTCTTGGATTCTGTTTGGAAGGCAGCAATAAAGCTCTCATTTATGAATTTATGTCTAATGGTTCTCTTGACAAGTTTATTTACAATAAGGGACTCAGAGCCATTCCATCCTTGAGTTGGGAAAATTTGTGGCAAATTGCCAAAGGGATAGCTCAAGGACTAGAATACTTGCACAAAGGATGCAACACTCGCATTTTACATTTTGACATAAAACCACATAACATACTTTTAGATGAAAATTATTGTCCCAAAGATTTTGGACTAGCAAAGCTTTGCCCCATGAAAGAGAGCACTATTTTCATGTCAGATGAAAGAGGAACAATAGGGTATAAAGCTCCAGAAGTGTGGAATAGACATCTAGGTGGAGTTTCCCACAAATCTGATGTATACAGTTATGGAATGATGCTGCTAGAAATTGTGGGAGGGAGAAAAAATATTAGTGCAGAAGCGAATCACACAAGTGAGATATATTTCCCACACTGGGCATACAACAGGCTAAAGCAGGGTGGAGAATTGAGACCTGATGAGGTGATGGCCACAGAAGAAAAGGAAATAGTAAGGAGAATGACTGTAGTGGGATTATGGTGTGTTCAAACGATTCCACATGATAGACCTACAATGAGTAGAGTAATAGAGATGCTAGAAGGCAACGTAGATTTCTTGGAAATGCCTCCAAAACCTGATCTTTCTTCTCCCATTATTTGA 1611 0.3861 MKLVPSDIAANVCSQQSEDGNESHTPLFQDSPSVQKITIFYYCPHIKNFPYGYFTCGDFITYFALEYDNLFINYPQLRRCKRSLHTWTDAQMNLSGGALGLEKVLNEGFVVKYNVSQHCARCLGSEGRCWRDGSENHVVNSCYYCLNGSHGQHCSPSPPKTSTKSAVAVAGKKWNKKMKFIIIGAVIAIVLICIAIFCQRYKSSILQGHFGLTSKMNRNIEAFLKNHGAQTLKRYKFSEVRKMTSSFKIKLGEGSFGAVYKGEILNACPVAIKKLNASKGNGEDFINEVASISRTSHVNVVQLLGFCLEGSNKALIYEFMSNGSLDKFIYNKGLRAIPSLSWENLWQIAKGIAQGLEYLHKGCNTRILHFDIKPHNILLDENYCPKDFGLAKLCPMKESTIFMSDERGTIGYKAPEVWNRHLGGVSHKSDVYSYGMMLLEIVGGRKNISAEANHTSEIYFPHWAYNRLKQGGELRPDEVMATEEKEIVRRMTVVGLWCVQTIPHDRPTMSRVIEMLEGNVDFLEMPPKPDLSSPII* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00749 536 Gene3D Phosphorylase Kinase; domain 1 219 319 - -
Lapu4g00749 536 ProSiteProfiles Protein kinase domain profile. 245 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00749 536 Pfam Wall-associated receptor kinase C-terminal 79 143 IPR032872 -
Lapu4g00749 536 ProSitePatterns Protein kinases ATP-binding region signature. 251 274 IPR017441 GO:0005524
Lapu4g00749 536 FunFam serine/threonine-protein kinase PBS1-like 214 319 - -
Lapu4g00749 536 Gene3D Transferase(Phosphotransferase) domain 1 320 524 - -
Lapu4g00749 536 Pfam Protein tyrosine and serine/threonine kinase 248 516 IPR001245 GO:0004672|GO:0006468
Lapu4g00749 536 SMART serkin_6 245 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00749 536 SUPERFAMILY Protein kinase-like (PK-like) 229 517 IPR011009 -
Lapu4g00749 536 FunFam PR5-like receptor kinase 320 528 - -
Lapu4g00749 536 PANTHER RUST RESISTANCE KINASE LR10-RELATED 215 529 IPR045874 GO:0004672
Lapu4g00749 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00749 Lapu-Chr4 17368875 17374001 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00749 101 531 Receptor kinase-like Gene Family AT1G66910 44.394 5.12e-119 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu4g00749 PK_Tyr_Ser-Thr 8.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00749 - - pvu:PHAVU_004G155800g 747.273