Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00744 ATGGAACAGAAACACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGGCTTGGGTTGAGTTCAGGGCAGAAATGGGTTGGCGGGAATCGTGACTCTGATGAGCTTTCCGTCGAGCAGATTCTGCAGGAGCTGAAGAAGCTGGTGGTTGAAGGAAGGGACGGAAAGTATTCATTTGAGGACTTTCCATATTACTTAAGTGAAAGAATTCGAGTTTTGTTGACAAGTGCTGCATATATTCATTTAAAACATCTTCACTTTTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGACTATTTTGCTATCTGGTCCAGCAGAATCTTACCAGCAAGCCCTTGCCAGAGCTTTAGCTCATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTTCTGACTTCTCAGTGAAGTTGCAGAACAAATTTGGATGTTCCAGAAAAGAACCATCTTTGAAAAGGTCAATATCGGAGGCAACCTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATGCTTTCTTCAGCAGGAGAAACAAGAGGGATTCTGCGTCAACAAAGCAGTGTCGCGGAAATTTCCAATCCTCCAAAGCTTAGGAGGAATGCTTCGGCTGCATCTGATATAAGTAGCACTGCTTCCCAGTGTGGTCCAACATTTCCAGCACGTTTAAAGCGCACAAGTAGCTTGTGTTTTGATGAAAAGCTCTTTGTGCAGGCACTTTACAAGCTTTTGGTTTCTGTCACAGAAACTAGTTCCATCATTTTATACATAAGGGATGTTGAGAAGCTCGTTCTCCAATCACCAAGGTTATATAATTTACTACAAAAGATGGTTAAGAAACTATCAGGCTCGGTGTTGATACTTGGTTCCCACCAGATATTAGATTCAGATGACGATTGCAAAGTTGATGAAAGGATCACTGCACTATTCCCCTACAACATTGACATCAAAGGTCCTGAAGATGAAACTCATTCTGGCAATTGGAAAGGCTCACTGGAAGAGGATATGAAAGCTATTCAGTTCCAAGATAACAGAAACCACATTGCTGAAGTACTAGCAGAAAATGACATTGACTGTGATGACTTGAATTCAATCTGCCATTCAGATACTATTTTACTCAGCAATTATATTGAAGAAATTGTAGTATCTGCAATATCTTACCATTTGATGAATACCAAGGACCCAGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCGCATGGATTGAGTCTGTTCCATGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCAAACAAGGAAAATGTTGGGGAAGATATTGCTGGTGCAAAGAATGAAGTTAAGTGTGACAATCAAACACCCGAAAACAAGAGTGAGACAGAGAAGTCCATCCCGGTAACAAAGAAAGATGGTGAAAATTCTACACCTGCAAAAGTGGAAGTTCCTGACAATGAGTTTGAGAAGCGCATAAGACCTGAGGTTATCCCTGCAAATGAGATAGGGGTTACATTTGCAGACATTGGCGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTCAGAAGGCCTGACCTCTTCAAGGGTGGCCTTCTAAAGCCATGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGGAAAACAATGCTAGCAAAAGCAATTGCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCCACTATTACATCAAAATGGTTTGGAGAAGATGAAAAGAACGTCCGAGCTCTATTCACACTGGCAGCTAAGGTTGCCCCGACAATCATCTTTGTTGACGAGGTTGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATCAAAAATGAGTTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTCGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGGGTCCTGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAGACTCTCCTGGCTAAAGAAAAGCATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGGCCTGTTAGAGAGCTAATACAGCGGGAGAGAATGAAGGAAATGGAAAAAAAGAAAAGAGAGGCAGAAGGCCAAAACTCTGAAGATGCTTCAAACAGTAAAGATAAGGAAGACCAAGAAATTACCCTCAGGCCTTTAAATATGGAAGACATGAAGCAGGCTAAGAGTCAGGTGGCTGCAAGTTTTGCGTCCGAAGGATCCGTAATGAATGAGTTGAAGCAGTGGAATGATTTATACGGAGAAGGAGGTTCAAGGAAGAAGCAACAACTCACTTACTTCCTTTAG 2454 0.4246 MEQKHVLLSALSVGVGLGVGLGLSSGQKWVGGNRDSDELSVEQILQELKKLVVEGRDGKYSFEDFPYYLSERIRVLLTSAAYIHLKHLHFSKHTRNLSPASRTILLSGPAESYQQALARALAHYFESKLLLLDISDFSVKLQNKFGCSRKEPSLKRSISEATLERMSGLFGSFSMLSSAGETRGILRQQSSVAEISNPPKLRRNASAASDISSTASQCGPTFPARLKRTSSLCFDEKLFVQALYKLLVSVTETSSIILYIRDVEKLVLQSPRLYNLLQKMVKKLSGSVLILGSHQILDSDDDCKVDERITALFPYNIDIKGPEDETHSGNWKGSLEEDMKAIQFQDNRNHIAEVLAENDIDCDDLNSICHSDTILLSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSHGLSLFHEGKSSGNLKTNESNKENVGEDIAGAKNEVKCDNQTPENKSETEKSIPVTKKDGENSTPAKVEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRVLVGLPSAENREMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQRERMKEMEKKKREAEGQNSEDASNSKDKEDQEITLRPLNMEDMKQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00744 817 Coils Coil 728 755 - -
Lapu4g00744 817 Pfam AAA+ lid domain 696 740 IPR041569 -
Lapu4g00744 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 737 IPR027417 -
Lapu4g00744 817 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Lapu4g00744 817 Gene3D - 676 779 - -
Lapu4g00744 817 MobiDBLite consensus disorder prediction 423 483 - -
Lapu4g00744 817 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 816 - -
Lapu4g00744 817 SMART AAA_5 540 677 IPR003593 GO:0016887
Lapu4g00744 817 MobiDBLite consensus disorder prediction 434 483 - -
Lapu4g00744 817 Gene3D - 503 785 IPR027417 -
Lapu4g00744 817 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Lapu4g00744 817 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 503 678 - -
Lapu4g00744 817 MobiDBLite consensus disorder prediction 736 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00744 Lapu-Chr4 17014532 17021905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00744 470 735 Calmodulin-binding Proteins AT3G56690 37.091 3.13e-42 164