Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00723 ATGGCTTCCGATCTTGAAGCAAAAGCCAAAGAGGCCTTTGTGGAAGATCACTTCGAACTCGCCGTGGACCTTCTCTCTCAGGCCATCAGCCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGCGCCCAAGGCCACATCAAATTGAACAACTTAACTGAGGCTGTTGCTGATGCTAAGAAAGCAATTGACTTGAATCCTTCTCTGCCAAAAGCATATTTGCGGAAAGGTACTGCATGCTTGAAGCTTGAGGAATATCAGACTGCCAAGGCTGCTCTGGAGATCGGTGCTTCATTGTCTCCAGACAACTCAAGATTTGTTAAATTAATCAAAGAGTGTGATAAGCTCATTGCAGAAGAATCGTATACTACCATACCTATACAGGAAAATACCATAGCACAGGATGTTATTCCAAAAGATGTTCAGCAACAGGATGATCTTCCAGAGAAGCCACCAGTTGTAGTGGCTAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATCAGGTGGTTGTGACCATATTTGCAAAGAAAATCCCGAAGGAAAGCGTTACTGTTGACTTTGGTGAACAAATACTAAATGTTAGTATTAATGTCCCAGGAGAAGATGCATATGTTTTTCAAACTCGCTTATTTGGAAAGATTGTACCCTCCAATTGCCTGTATGAAGTTTTGCACACCAAAATTGAAATTCGCCTTAAGAAAGCAGAACTTATTCACTGGGCATCTCTTGAATTCACCAGAGACGTTGTAGTTCCACAGAGGGTTAATGCCTCTTCAGTTACTGCTAGACCTTCTTATCCGTCCTCAAAACAAACCAGAGATTGGGACAAGATCGAAGCTCAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGGGATGCTGCATTGAACAAGTTTTTCCAGGAAATATACCAAGATGCAGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACTGTGCTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTGGAGGGAAGCCCTCCTGATGGCATGGAGTTGAAGAAATGGGAGTATTAA 1074 0.4255 MASDLEAKAKEAFVEDHFELAVDLLSQAISLEPNKAELYADRAQGHIKLNNLTEAVADAKKAIDLNPSLPKAYLRKGTACLKLEEYQTAKAALEIGASLSPDNSRFVKLIKECDKLIAEESYTTIPIQENTIAQDVIPKDVQQQDDLPEKPPVVVAKPKYRHEFYQKPDQVVVTIFAKKIPKESVTVDFGEQILNVSINVPGEDAYVFQTRLFGKIVPSNCLYEVLHTKIEIRLKKAELIHWASLEFTRDVVVPQRVNASSVTARPSYPSSKQTRDWDKIEAQVKKEEKDEKLDGDAALNKFFQEIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00723 357 ProSiteProfiles SGS domain profile. 267 357 IPR007699 -
Lapu4g00723 357 PANTHER PROTEIN SGT1 HOMOLOG 1 355 IPR044563 GO:0051087
Lapu4g00723 357 Pfam SGS domain 275 355 IPR007699 -
Lapu4g00723 357 CDD p23_CS_SGT1_like 163 246 - -
Lapu4g00723 357 SMART tpr_5 70 103 IPR019734 GO:0005515
Lapu4g00723 357 SMART tpr_5 2 35 IPR019734 GO:0005515
Lapu4g00723 357 SMART tpr_5 36 69 IPR019734 GO:0005515
Lapu4g00723 357 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Lapu4g00723 357 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Lapu4g00723 357 ProSiteProfiles CS domain profile. 157 246 IPR007052 -
Lapu4g00723 357 FunFam Protein SGT1 homolog 1 128 - -
Lapu4g00723 357 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Lapu4g00723 357 FunFam Protein SGT1 homolog A 155 259 - -
Lapu4g00723 357 Pfam CS domain 161 236 IPR007052 -
Lapu4g00723 357 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lapu4g00723 357 Gene3D - 158 248 IPR008978 -
Lapu4g00723 357 Gene3D Tetratricopeptide repeat domain 1 145 IPR011990 GO:0005515
Lapu4g00723 357 SUPERFAMILY HSP20-like chaperones 144 254 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00723 Lapu-Chr4 16116243 16121352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00723 1 101 U-box Gene Family AT3G07370 30.476 7.00e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00723 K12795 - gmx:100780174 611.298