Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00687 ATGACTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAAACACAGAAAACCCACCCACCATAACTTCCACCACCACTCCTCGATCTCCAAACACCACCCCTTGCTTGGATGTGAGCCAAGAGAATGGCTCATTCTCTTTTCCTAATCTTGTGCAACCCACAACCAATGAGTTTCAAGAGCTTCATCAGTTGCTAATAAACTTCAACCCCACCACCACCACCATTTCTAGCACTATCACTAGTGGTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCAGGATTCATTGGAGAACAGCATATACAACAAGGTCATCACCATCATCTAGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCACCACTTCTGGTTTTGACAGATTCCAACGCCATCACCACCACCACCAACAACAACAACAACATCAACATCAACCCCAAACCCCAGAACAACAGCAACAAAAGCAAAACCAGCCACAACTTCAAGCACCCCAAACAAGTCCCATCCTTTCACCAACAACTCAACCACAAACACCCAGATCAAGAAAGAGAAAAAACCACCAGAAGAAAATGGTGTGCCATGTAACCGCAGACAACCTCTCTGCAGACTTATGGGCATGGCGTAAATATGGTCAAAAGCCAATCAAAGGCTCTCCATATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTAGAGCGAAGTACCACCGAACCCAACACGTTCGTCGTCACCTACACGGGCGACCACAAGCACGCCAAACCCGTTCACCGGAACTCCCTCGCCGGAAGCACCCGAACCAAGCCATCTCCGACCCCTTTACCCGAAGCCCATGAAGCTGTTTCTTGTCTCAAAATAGAAAACGCGTGTTCTTCGGCTTCTGAGCTTTCTACCACGTCGTTGAAGTCCGGCACGCCGGAAAATGAGGAAACGGTCGCCGCCGGCGAGCCCGATTTTCCAGAAATGAAAATTGACCCTGACGTGCTCTCTGAAAACGACGACTACGACGACGACGTTTTGATACCCAACACCGGTGCCATGTTGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTGAAACGAAGGCGTCGGATCCGAATAGTGATTCCGGGTTGACCCGTTCCGAATCAGAGCCTTTTTCTAACCCGATGTAG 1218 0.491 MTHEDWDLFAIVRSCKAATFTATTNTENPPTITSTTTPRSPNTTPCLDVSQENGSFSFPNLVQPTTNEFQELHQLLINFNPTTTTISSTITSGIGINPNSTFSDVAGFIGEQHIQQGHHHHLVPAPTNHTSIGAPTTSGFDRFQRHHHHHQQQQQHQHQPQTPEQQQQKQNQPQLQAPQTSPILSPTTQPQTPRSRKRKNHQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNTFVVTYTGDHKHAKPVHRNSLAGSTRTKPSPTPLPEAHEAVSCLKIENACSSASELSTTSLKSGTPENEETVAAGEPDFPEMKIDPDVLSENDDYDDDVLIPNTGAMLDAVLLGLTNGAETKASDPNSDSGLTRSESEPFSNPM* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00687 405 MobiDBLite consensus disorder prediction 115 206 - -
Lapu4g00687 405 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu4g00687 405 ProSiteProfiles WRKY domain profile. 210 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu4g00687 405 MobiDBLite consensus disorder prediction 271 298 - -
Lapu4g00687 405 SUPERFAMILY WRKY DNA-binding domain 211 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu4g00687 405 SMART WRKY_cls 215 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu4g00687 405 Gene3D WRKY domain 199 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu4g00687 405 MobiDBLite consensus disorder prediction 318 343 - -
Lapu4g00687 405 MobiDBLite consensus disorder prediction 381 405 - -
Lapu4g00687 405 MobiDBLite consensus disorder prediction 155 193 - -
Lapu4g00687 405 FunFam WRKY transcription factor 22 198 269 - -
Lapu4g00687 405 MobiDBLite consensus disorder prediction 23 42 - -
Lapu4g00687 405 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 355 IPR044810 GO:0003700
Lapu4g00687 405 MobiDBLite consensus disorder prediction 380 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00687 Lapu-Chr4 14273173 14274718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00687 194 297 WRKY Transcription Factor Family AT5G52830 75.238 6.19e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu4g00687 WRKY 8.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00687 - - gmx:100796829 522.702