Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00673 ATGGTATCCAAAAACCCGAACCCGCCAGAGGGATTCTACTTGGATCCGACTGGCATGGCTCTCCCAGGGATGCCTCCCTTCGCCTCCGTCTCTGCCACCGCGGCCGCCGTCTCCGCCTCCAACTCCTCGGAAGACGCAGCCAAGAAGATCCGCAAGCCCTACACTATCACCAAGTCGCGGGAGAACTGGACCGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAAATTGAAGCATTTGTTGGATCAAAGACTGTCATACAGATACGTAGTCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGAGCAAGTGAACATCTTCCGCCACCCAGGCCTAAAAGAAAAGCGGCACATCCATATCCTCAAAAAGCTTCGAAAAATGTATCAGGATCTTTTCAATCTTCATCTGCTTTGCTTGAACCTGGATATATCCTGAAGAATGATTCCCCAGCAATGCTTAAAATTCCTATGAACACTGTGGTGTCGTCCTGGTCAAACAACACCCTGCAAACTGTCAATTTATCCCCTGTGACAAAAGTGAAAAATCTTTGCAGTAGTGGTGAAAGCACTCCCAAAGTGCTCCCAGCTGGTGAATCTAATGGTCAAGGACCTCATCAAGGGAATAAAATCCATCCATTGAGAGTTCTTCCAGATTTTACTCAGGTATACGGTTTCATTGGCAGTGTATTTGATCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGACGTTGAGACAGTGCTACTGCTAATGAGAAACCTGTCTATCAATCTAACTAGCCCAGATTTTGAGGATCATAGGAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAAATAACTATCAATGTGGATAG 903 0.4563 MVSKNPNPPEGFYLDPTGMALPGMPPFASVSATAAAVSASNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASKNVSGSFQSSSALLEPGYILKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKVKNLCSSGESTPKVLPAGESNGQGPHQGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEVEPERNNYQCG* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00673 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Lapu4g00673 300 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Lapu4g00673 300 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Lapu4g00673 300 SMART sant 59 107 IPR001005 -
Lapu4g00673 300 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Lapu4g00673 300 MobiDBLite consensus disorder prediction 110 143 - -
Lapu4g00673 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Lapu4g00673 300 Gene3D - 62 110 - -
Lapu4g00673 300 PANTHER SWI/SNF COMPLEX-RELATED 37 274 - -
Lapu4g00673 300 CDD SANT 62 105 IPR001005 -
Lapu4g00673 300 SUPERFAMILY Homeodomain-like 54 110 IPR009057 -
Lapu4g00673 300 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00673 Lapu-Chr4 8502299 8509375 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g00673 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00673 - - vum:124832036 514.998