Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00668 ATGGAGCAGTCTCTGCTGAGAGGCGAAAGCAGTGGCCTCAGCTACCGGCGGCGAGGAGTTTTCCGGCGTTCTGACGCTTTAACCTACGGTTCCAACTACGAAAAAGCCGCTGCACTCATCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGAGCAAATTCTTGATTCATCAAACTTCCAAAATTATGCAAAATTTTATTTTATATTCACTAAATGCAATCTCGTATGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTAAAAAACTCGCTACACATTCCTGCAATGATAGAGAGTATTTCTATTTGGGTCAATTGCCATATCTGACTGATGCAGAGTGTCTTATTTATGAGGGAATAACTCTTCTTTTGCTAATCATACATACTTTCTTCCCTTTGTCATACGAAGGATCCCGTATATATTGGAAAAGTACTATTAATCAATTGAAGGTTTTCTGTCTATTAGTTCTTGTTGCTGATATGCTGCTCTATGCCTTTTACTTGTCTCCCCTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGAGTTGTTCTTTTTGTGCTGAACATTAGGGAGCTACGAGAAACCACCATTATCTTGGCTGGGATGCTTGACACATATTTAAATGTCTTGGCATTGGGACTTCTGTTTCTTCTTTTTGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCCTATGGTACTACGTTGTATCAGATGTTTCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTACCTGCATACAAGTCTTCTCGCTGGTATTTCCTGTTTTTTGTACTGTTTGTGCTGGTAGGGGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTTTATGACAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTTGAAAAGGATCTTCTGAGAAGAACTATGCTGGAGAAAGCTTTTAATCTCTTAGATACACATAATGTTGGAGCTCTCAACAAAAGTCAATGCATTAGGCTCTTCGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGTGAAGAATTTGAGCTGATATTTGATGAGCTGGATGATACTCGTGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCGATTGCTTTAAAATTTCATAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCATTCTACCACTGGCCCAGCTCAAAGAGATTAAAAGAATTTGTGAAGAGTCCTATGTTTGGATACTTAGTGTCCTTCATTCTCATAGTAAATCTGGTTGCAGTTATTATTGAGACAACGCTGGATATAGAAAACAATTCTGGTCAAAAGCTGTGGCAAGTGGTTGAGTTTATTTTTGGGTGGATATATGTAGTGGAAATGGTTTTAAAGATTTATGCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATTATCACGGTGATAATTGCCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGATCTTCCTTTTATCTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGACTCCTAATGCACGTCAAGCGATACCGAGCCTTTGTGGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGCATTTATTGTTCGCTTGGTGTACAGATCTTTGGTGGAATTGTTAATGCTGGAAACCCCGAATTGGAATCAACAGCTCTTGCCGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCGAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGCTACAAGGAATTAACTGGGACTTCTTGGACCTATTTGTACTTCGTTAGCTTCTACTTAATTACTGTTTTGCTGCTTTTGAACTTGGTTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCATCAGAAAGTAGTGAAGGAACGGACAAGGAAGTTGAAGGAGATAAATATCGAAAGCGGTCCATTGGCACTAAAACACGAAGCCAGAGGGTTGATGCTCTTCTTCATCATATGTTGAGTGCTGAGTTGTGTCAAAATCAGCCTTCCACTACAGAAACTTGA 2214 0.3866 MEQSLLRGESSGLSYRRRGVFRRSDALTYGSNYEKAAALIDLAEDGVGLPEQILDSSNFQNYAKFYFIFTKCNLVWSLSYFALIVLNFLEKPLWCKKLATHSCNDREYFYLGQLPYLTDAECLIYEGITLLLLIIHTFFPLSYEGSRIYWKSTINQLKVFCLLVLVADMLLYAFYLSPLAFDFLPFRIAPYIRVVLFVLNIRELRETTIILAGMLDTYLNVLALGLLFLLFASWVAYVFFEDTIQGKTVFTSYGTTLYQMFLLFTTSNNPDVWVPAYKSSRWYFLFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLLRRTMLEKAFNLLDTHNVGALNKSQCIRLFEELNKYRTLPKISSEEFELIFDELDDTRDIKINKDEFADICNAIALKFHKEDVMSYFEYLAFYHWPSSKRLKEFVKSPMFGYLVSFILIVNLVAVIIETTLDIENNSGQKLWQVVEFIFGWIYVVEMVLKIYAYGFENYWRDGQNRFDFIITVIIAIGETVTFAVPDDDLPFISNGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYKELTGTSWTYLYFVSFYLITVLLLLNLVIAFVLEAFFAEMDLESSESSEGTDKEVEGDKYRKRSIGTKTRSQRVDALLHHMLSAELCQNQPSTTET* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00668 737 Gene3D - 203 315 - -
Lapu4g00668 737 FunFam Two pore calcium channel protein 1 203 314 - -
Lapu4g00668 737 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 732 IPR044581 GO:0005245
Lapu4g00668 737 MobiDBLite consensus disorder prediction 688 708 - -
Lapu4g00668 737 SUPERFAMILY Voltage-gated potassium channels 430 677 - -
Lapu4g00668 737 Gene3D - 320 397 - -
Lapu4g00668 737 FunFam Two pore calcium channel protein 1 423 556 - -
Lapu4g00668 737 Gene3D - 422 556 IPR027359 -
Lapu4g00668 737 FunFam Two pore calcium channel protein 1 557 714 - -
Lapu4g00668 737 Gene3D - 557 716 - -
Lapu4g00668 737 Pfam Ion transport protein 132 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu4g00668 737 Pfam Ion transport protein 431 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu4g00668 737 SUPERFAMILY EF-hand 326 412 IPR011992 -
Lapu4g00668 737 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00668 1 737 Ion Channels AT4G03560 66.802 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00668 K16900 - gmx:100806160 1311.21