Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00655 ATGGATCTCAATATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGTGGTTTTGCTTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTCGCCTGCGGCCGGCCATTGGTTGTTCGTCTTGCTGGTGAGAAGTGCTTGTTAGAAACAGCTGATAAGTCTACAAAAGCTACAAGTGAGGGGCACAAGATGCTTACCATTGGTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTAGGATCAAGAAGCAGAAGCAAAGTGACAATATTTCTTGA 477 0.4235 MDLNIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKATSEGHKMLTIGGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRIKKQKQSDNIS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00655 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 94 - -
Lapu4g00655 158 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Lapu4g00655 158 CDD RRM_RBM18 12 90 IPR039157 -
Lapu4g00655 158 Gene3D - 8 102 IPR012677 -
Lapu4g00655 158 Coils Coil 131 151 - -
Lapu4g00655 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Lapu4g00655 158 SMART rrm1_1 12 88 IPR000504 GO:0003723
Lapu4g00655 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00655 Lapu-Chr4 8198982 8201514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00655 11 93 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.44e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00655 K24527 - gmx:100806572 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00655 4 8198982 8201514 Lapu4g00655 4 8198982 8201514 ECH