Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00606 ATGAATACAGAAGAGAGAATAGATACCATAATCAGACAGACGATTGGCAGAGATCCTTCCCCTTATTTTCCAAGGACCAATGACAGCTCTATACAGTGGATGCAATTAATCCATGCTTTAGATTCACAAGAATATCTAGGTTGGCCTTTGCTCTCTCCTATGAAGGTTCAGTTGCAGAAGTGTGACAAATGTTATCGAGAGTTTTGCTCCCCAATTAACTATAGAAGACATATTCGTGTACATCATCGGTTGAAAAAGCTTGATAAGGATTTTATAAAAACTAGGGATCATTTAGGAGCTTATTGGGATAAGCTCTCTGTAGAAGAAGCAAAGGAAGTTGTATCATTTGAAAATGTGGTGCTGGAGGAAGTTCCGGGTTCTTCAATTTTAAAGTCATTGACAACTCTTATTCAAAACCAAGGAATATATTCATTTCCTCCGTATTATCTGATGGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTAAATCTTCCATCTTTCCTATATCTTCCCAACAGTTGTTCTGCGTTCTTGATGATGCCAGTGAAAGAACATGTTTATGCGGAACAGCAGAGTCTGTGCAAAGATATGTATTTGATGGAGAGGCTGGAAAAATTGGTCTTGAACTAAGAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAACAAAAATTGGCAAGTGTCTTAACTTTCAAAATTTGTTCATATAACTCCCCCCTTCTCTTCTTTCTTCATGCAATGTACCTTTTTGCATTTGGTTTCATAGAA 768 0.3763 MNTEERIDTIIRQTIGRDPSPYFPRTNDSSIQWMQLIHALDSQEYLGWPLLSPMKVQLQKCDKCYREFCSPINYRRHIRVHHRLKKLDKDFIKTRDHLGAYWDKLSVEEAKEVVSFENVVLEEVPGSSILKSLTTLIQNQGIYSFPPYYLMAGAALLDIVQSKSSIFPISSQQLFCVLDDASERTCLCGTAESVQRYVFDGEAGKIGLELRNLVACTSFLLEQKLASVLTFKICSYNSPLLFFLHAMYLFAFGFIE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00606 256 ProSitePatterns Zinc finger C2H2 type domain signature. 61 82 IPR013087 -
Lapu4g00606 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Lapu4g00606 256 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00606 Lapu-Chr4 6483002 6489015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00606 7 225 C2H2 Transcription Factor Family AT4G25610 52.511 2.81e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu4g00606 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00606 - - gmx:100809067 376.326