Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00600 ATGTCAGAATCCAAGGAAGAAAATCCTTACCTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTGCCATGGATTTTGACATTGGCTTGGAAGGTCTATGGCCCCTTGATCATATATCTTTCGTCTCTAACCCCATGTCTCCTTTTCTTTTATCCACTGTCTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGAGAAGCAAATCAGAATTGCAACTGCAGGTAATACAAAAGCTGCAAATCCAGTTGAAAATTATGACAACAAGAAAACTGTGTCACCACCTCTTGTAGCTGTGCCACCTTCAGAAAATCCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGAAATGGAAACCGGTATGCACTCACGACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGCGTCTCTGATGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCCGGTAGAGTTTTTCAGCATAAAATTCCAGAATGGACTCCCAATGTTCAGTACTATTCTAGCAAAGAGTATCAACGCCTAAATCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCTGGACAGTCATGTGTAGCTGTACTGGAGTTGATTATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAATCAAGATCGCCAGTACGCATTAGCAGAGATTTTGGAGATACTGACAGTTGTTTGTGAGACTCATAGTTTGCCTCTGGCACAAACATGGGTTCCGTGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCCAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCACGAGGCTTGTGTTGAGCATCACTTACAACAAGCTCAAGGGGTTGCTGGGAGGGCATTTTTGTCTCACAACATGTGTTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTGTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGATAGAGTTTTTTCTTCCTCCAAGGATTACTGACTTCAATGAACAAAAAAGTTTGTTGGGGTCCATATTGGCCACAATGAAGCCACATTTCCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGAGAATTGTTCAATTGAAATTATAGAAGCAAGAAAAGAAAGAGTTCATTTCAGATTTGAATCAATTCCAATTACTCAATCTTCTAAGTCACCACCTAGACATGCCTCACCAAATATGGGGGAGAGGTTGCCACTGGAGCCACCAGAGCAGCAAACAATGGCAGACTTTGATGACATAAATAATGTAAGGAGTCTTGGTGATAATACAGGTGGACACATTGATCAGAACACTTCTTTGGAAGCCAGAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGGAAAGCTGAGAAATCAATTAGTCTTGATGTTTTGCAACATTACTTCACAGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGTGCATTTGGTTTGAACTCTCTAAGTACTGGTTCACTTCCCATTGCGGCTGGTTCCTTTTCTGAGCCTTCCACTTCAAACAAGTTCAACCGCCAAACCTCATTGACCATTAGGCCATCAGAATCTAAGATCAATGAAAATGAATTTGATGCTTCTAGAGCATCAGAATCAAACAGACAGGCTGGGGTGGAAGATCACTTCCTATGTACAAGGACGCAAAATCCTGAGAAAGTGATTAATGAAAAAGTTGTGGCCATTCAGGAGATTGGCTCTAAAGGCACAACCAAGTTTAGAACTGGGAGCGGCTCAAGTGAAGAAAGTGCAAATCCTTCCCCTCATGGTTCATGCCAAGGTAGTCCCCCAAATGAATTTTCACCTCCAAAAGATATATTTGTAACAGGCAACAGCGAGCAATGTCTTGTGTTAAGGGGATCACTGGGGTCAACACTATACTCAACTAGTACACCGAACCGTGCAACTGCATACCGTATGCCTAACTTCGTGGAAACAACAGAACCTCAAGAACCATTTGGAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTATGTCCTTCAGCTGATGCTGTTTTGGAGGATCAGGTTCCAGAACCTTGCAGGATGAATCCTCAATGTTCTGATTTGGCTCCTGTGCAACACATGGATTCTCTCAATAATAATAACATGACACCTTTTCCAGTTAGGAATGAGATGAAGAGTGTGACCATTAAGGCAACTTATAAAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGGTATTATGGAATTGAAAGAAGAAATTGCCAAAAGATTGAAACTAGAGGAGGGAACATTTGATATCAAGTATTTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGACTTGTGGTGCATGATATTTTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTATATAG 2961 0.4191 MSESKEENPYLLPKSKPQEEHGFAMDFDIGLEGLWPLDHISFVSNPMSPFLLSTVSEQPFSPVWAFSDVEDEKQIRIATAGNTKAANPVENYDNKKTVSPPLVAVPPSENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTASLMYMFSVDGENDEILGLPGRVFQHKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNQDRQYALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQAQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSCFAVCLQSSHTGNDEYVIEFFLPPRITDFNEQKSLLGSILATMKPHFQSLKIAAGVELEENCSIEIIEARKERVHFRFESIPITQSSKSPPRHASPNMGERLPLEPPEQQTMADFDDINNVRSLGDNTGGHIDQNTSLEARTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSLPIAAGSFSEPSTSNKFNRQTSLTIRPSESKINENEFDASRASESNRQAGVEDHFLCTRTQNPEKVINEKVVAIQEIGSKGTTKFRTGSGSSEESANPSPHGSCQGSPPNEFSPPKDIFVTGNSEQCLVLRGSLGSTLYSTSTPNRATAYRMPNFVETTEPQEPFGGQLLEGVGSSKDLRNLCPSADAVLEDQVPEPCRMNPQCSDLAPVQHMDSLNNNNMTPFPVRNEMKSVTIKATYKEDIIRFKISLNCGIMELKEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGCI* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00600 986 CDD PB1_NLP 887 967 IPR034891 -
Lapu4g00600 986 MobiDBLite consensus disorder prediction 736 764 - -
Lapu4g00600 986 FunFam RWP-RK domain-containing protein 883 967 - -
Lapu4g00600 986 PANTHER PROTEIN NLP8 56 980 IPR045012 GO:0003700
Lapu4g00600 986 SUPERFAMILY CAD & PB1 domains 879 971 - -
Lapu4g00600 986 MobiDBLite consensus disorder prediction 542 574 - -
Lapu4g00600 986 SMART PB1_new 886 968 IPR000270 GO:0005515
Lapu4g00600 986 Gene3D - 883 970 - -
Lapu4g00600 986 Pfam PB1 domain 887 967 IPR000270 GO:0005515
Lapu4g00600 986 MobiDBLite consensus disorder prediction 503 524 - -
Lapu4g00600 986 MobiDBLite consensus disorder prediction 680 702 - -
Lapu4g00600 986 Pfam RWP-RK domain 577 624 IPR003035 -
Lapu4g00600 986 ProSiteProfiles PB1 domain profile. 886 968 IPR000270 GO:0005515
Lapu4g00600 986 MobiDBLite consensus disorder prediction 736 772 - -
Lapu4g00600 986 ProSiteProfiles RWP-RK domain profile. 561 644 IPR003035 -
Lapu4g00600 986 MobiDBLite consensus disorder prediction 556 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00600 Lapu-Chr4 6410433 6416694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00600 251 981 NLP Transcription Factor Family AT4G24020 52.233 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lapu4g00600 PB1 1.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00600 - - gmx:100780901 1738.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00600 4 6410433 6416694 Lapu7g02034 7 36533599 36538399 PCT