Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00595 ATGGAAACCCCAACCACACTCACCGCCTTCCTCCACCACGTCGCCGCCAAATTCCCCTCCCGCCGAGCCCTTTCCGTCGCCACCAAATTTAACCTCACTCACTCCCGCCTCCACCAACTGGCCGAAACCGCCGCCCAACGATTGGTCGCCGCCGGAATCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTGTAATTATCTTTCTAGCTGTTATTCGAGTGCGCGCCACAGCCGCGCCGTTAAACTCGGCTTACACAGCCGAGGAGTTCGAGTTTTACTTATCTGACTCCGAGTCCAAGCTTCTCCTGACATCCTCAGAAGGAAACGACTCAGCTCAAGCCGCAGCTTCAAAACTCAACATAGCTCACGCCACGGCTTCGATAAGCCAGGTCGAGAATAACGAAGCCGAGCTTAATCTCTCGCTGAGTCACTCCGACTCGGTTGATTCGGTTGAGTCACTCGTTAACGATCCTGATGACGTGGCGCTTTTCCTCCACACCTCGGGCACCACGAGCCGCCCCAAGGGAGTGCCGCTCACCCAGCACAACTTGCTCTCTTCCGTACACAACATTAAATCGGTTTATCGACTCACCGAGTCTGACTCGACGGTGATTGTGCTTCCGCTTTTTCACGTGCACGGTTTGATCGCAGGGTTGCTGAGTTCCCTCGCGGCCGGTGCGGCGGTGGCGCTGCCGGCTGCAGGGAGGTTCTCCGCCTCGGCGTTCTGGAAAGACATGGTGAAGTACAACGCCACGTGGTACACTGCGGTCCCCACCATACACCAGATTATACTGGATCGCCACGCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATCCGAAGCTGCAGCGCGTCGCTGGCACCAGCTATTTTGGGTAAACTCGAGGAGTCTTTCGGTGCGCCGGTGTTGGAGGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCGAACCCTTTGCCGCAAGATGGGCCTCACAAGGCCGGGTCGGTAGGAAAGCCCGTGGGCCAAGAAATGGTTATTTTGGATCAAATGGGTCGGGTTCAAGAAGCTGAAGTTAGCGGAGAAGTTTGCATTCGTGGCCCCAATGTTACCAAGGGATATAAAAATAACGTGGAAGCCAATACGGCGGCGTTTCAGTTTGGTTGGTTCCATACCGGGGATGTTGGTTACTTGGATTCCGATGGGTATTTGCACCTCGTTGGTCGCATCAAGGAACTCATCAACCGTGGAGGCGAAAAGATATCACCAATAGAAGTTGATGCTGTTTTGCTTTCACATCCTGACATTGCTCAAGCAGTTGCTTTCGGAGTACCTGATGCCAAGTATGGTGAAGAGATATATTGTGCGGTCATTCCAAGAGAAGGATCAAATGTTGATGAGGCAGAGGTGCTAAGATATAGCAAAAATAATCTTGCATCCTTCAAAGTTCCAAAGAAGGTTTTCATTACTGATTCTTTGCCCAAGACTGCCACCGGAAAAATTTTGCGTCGTTTAGTGGCAGAACACTTTGTCTCCCAAATTTGA 1551 0.5319 METPTTLTAFLHHVAAKFPSRRALSVATKFNLTHSRLHQLAETAAQRLVAAGIKPGDVVALTFPNTVEFVIIFLAVIRVRATAAPLNSAYTAEEFEFYLSDSESKLLLTSSEGNDSAQAAASKLNIAHATASISQVENNEAELNLSLSHSDSVDSVESLVNDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVHNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLAAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILGKLEESFGAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQMGRVQEAEVSGEVCIRGPNVTKGYKNNVEANTAAFQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDAKYGEEIYCAVIPREGSNVDEAEVLRYSKNNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00595 516 Pfam AMP-binding enzyme C-terminal domain 427 502 IPR025110 -
Lapu4g00595 516 SUPERFAMILY Acetyl-CoA synthetase-like 4 514 - -
Lapu4g00595 516 FunFam 4-coumarate--CoA ligase 2 414 515 - -
Lapu4g00595 516 FunFam Peroxisomal-coenzyme A synthetase 6 411 - -
Lapu4g00595 516 Gene3D - 5 411 IPR042099 -
Lapu4g00595 516 Pfam AMP-binding enzyme 12 418 IPR000873 -
Lapu4g00595 516 PANTHER ACYL-COA SYNTHETASE 6 513 - -
Lapu4g00595 516 CDD FACL_fum10p_like 19 510 IPR045310 GO:0016874
Lapu4g00595 516 ProSitePatterns Putative AMP-binding domain signature. 169 180 IPR020845 -
Lapu4g00595 516 Gene3D - 412 514 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00595 Lapu-Chr4 6210259 6214887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00595 5 516 Monolignol Biosynthesis Gene Families AT4G05160 29.356 3.77e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00595 K22133 - gmx:100779306 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00595 4 6210259 6214887 Lapu4g00595 4 6210259 6214887 ECH