LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu4g00575	ATGGGCGTGAAGAACTTGTGGGACCTGCTGGAATCGTGCAAGAAAAGGGTTCCCCTTCACCATCTACAGAACAAGAGGGTGTGCGTGGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCACACGCTTGCGTCAAGGAGAAAGTGTACCTCAGGGGGCTCTTTCACCGACTCAGAGCACTCATTGCGCTCAATTGCAGCCTTGTCTTCGTCGCAGATGGATCAATTCCTGCCATAAAATTATCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGTTAATGATAATAATAATGCAGGTAGCACAAAACGAAACAAACCTACAGAAAGTGACTTCATTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATTAAAGAGGCTAAAATCTTGGGGATGGCTCTTGGAATATCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTCAGTTTAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGACGGATATTGAAAGAAAACTTGGACTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGGGACAAATATGTTCTTAAGAAATTTGCTTCCGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGGCAAGAATGATTTAGGGCGTGATGATAACATTTTACAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCCGCAGATTCAGATGTTGTGCACAAGGCTCTTGCTCAATATACATTTCAACGTACTAAACTCCAGCAGATATGTGCTGAATTCTTTCTGTGGCCTTCGGAGAAAACAGATGGGTATATCCTTCCATGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGGTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATCAGATTCCTGTAAAGTGTCCTGTCTCAGAAATCATTAAGAATCGAAGAGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATTGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATCGAGAGTGCCTGCCGTGAGAAAATTTTGGAGTTTGAGGAAAGAAAAGCTCAAGGGAAGAAACAAAATGTTCAGAAAAGAAGACCAAAGAAAAAGGAAACTAATTCATGTCTTGCTGAGCTTGATCTAAAACTTCAGAATTTGTTGCTCGATAATAATTTGAGAGACCAAACCAACTTCAATGCCTCTGATTCTTCATCAAGGATTACAACTTCTATGGCTGAAGCTATGCCTGAAGATGATCTGAATACCGAAGACTTGTTGCATCTATCACATGATACTGAGTTGATTCAGAATACTAGCAACATATTTAATAGCAATAAGGCGGTATCTAGTATAGGTAAAAATGAGATTATAGATCTTCTGAGTCCTTCCCCACTTAAGAAATTCAATTTTTCTTCAAAATGTCAGCAATCAAGTGACCAAACTATCGATGTGATTAATTTGAGTGATTCAGAAAATGACATGTCTGTTGAACACAAGCAGAAAGCCAAGGAGCTGAGATTGTTCTTAGCTAGTATTAGAAATGATTTTCATTGA	1737	0.4001	MGVKNLWDLLESCKKRVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHRLRALIALNCSLVFVADGSIPAIKLSTYRRRLNVGKELMIIIMQVAQNETNLQKVTSLRRNMGSEFSCMIKEAKILGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGLGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYVLKKFASEGLGWVKKRKGGKNDLGRDDNILQVINAYMKPKCHSADSDVVHKALAQYTFQRTKLQQICAEFFLWPSEKTDGYILPCIAERDLRRFANLRLTSSEVGLNLPLHQIPVKCPVSEIIKNRRVQGRECYEVSWEGIDGLETSIVPADLIESACREKILEFEERKAQGKKQNVQKRRPKKKETNSCLAELDLKLQNLLLDNNLRDQTNFNASDSSSRITTSMAEAMPEDDLNTEDLLHLSHDTELIQNTSNIFNSNKAVSSIGKNEIIDLLSPSPLKKFNFSSKCQQSSDQTIDVINLSDSENDMSVEHKQKAKELRLFLASIRNDFH*	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu4g00575	578	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	207	343	IPR036279	-
	Lapu4g00575	578	Pfam	XPG I-region	140	222	IPR006086	GO:0004518
	Lapu4g00575	578	FunFam	flap endonuclease GEN-like 2	2	206	-	-
	Lapu4g00575	578	CDD	PIN_GEN1	2	207	-	-
	Lapu4g00575	578	SUPERFAMILY	Chromo domain-like	365	417	IPR016197	-
	Lapu4g00575	578	Gene3D	-	2	206	-	-
	Lapu4g00575	578	Pfam	XPG N-terminal domain	1	91	IPR006085	GO:0004518
	Lapu4g00575	578	Gene3D	-	362	430	-	-
	Lapu4g00575	578	SMART	xpgn3	1	97	IPR006085	GO:0004518
	Lapu4g00575	578	SMART	xpgineu	137	207	IPR006086	GO:0004518
	Lapu4g00575	578	Gene3D	-	207	263	-	-
	Lapu4g00575	578	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	500	IPR006084	-
	Lapu4g00575	578	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	136	153	IPR006084	-
	Lapu4g00575	578	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	157	177	IPR006084	-
	Lapu4g00575	578	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	71	90	IPR006084	-
	Lapu4g00575	578	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Lapu4g00575	578	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	212	227	IPR006084	-
	Lapu4g00575	578	SUPERFAMILY	PIN domain-like	3	222	IPR029060	-
	Lapu4g00575	578	FunFam	Flap endonuclease GEN-like 1	207	264	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu4g00575	Lapu-Chr4	5873632	5886900	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu4g00575	1	243	Core DNA Replication Machinery Family	AT5G26680	26.154	1.36e-12	68.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu4g00575	K15338		-	gmx:100806919	978.393