Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00568 ATGTCTAACTTCAAACACTTCCACTCCCTCCTCACTCTCTCCTTCCCAACCTCTAAATCACAAACCCAAATGCCTAAATCAAATCAATTCCACACCTTTCACCTCACTCTCTTTACATTCGTCTCCCTCTTGTTGCTCTGTTTTTCCACAGCACAAGCACAATCCTCCATGGAGCCTGTTCCCACATACATCACCCACCACAACTGGGAGCCCTCAGTTGCCATCACAGTTGGAGCCATCATCTTTGCTCTTCTTGTCATGGGAATCCTCTCCATCTACCTCCGCAGGTGTGCTGAGTCACGCATCATCATCACCACGCAGACCACCACCACAGTCCCCTGCTCCTGCGCACAGGGGATCAACAGGGAACTCCTGAATACCTTCCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTTGAATGTGCGGTGTGCTTGACGGATTTCTCAGACAAAGACGCCCTCAGACTCCTCCCCAAATGCAACCATGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACATGCCCAGTTTGCCGCGCGAATCTAAGCCAGGATTCGTGCCAGGTTGCCATAACAGTCCCTACCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTATGGCAGAACCAAATCAAAACACAAACACAAACCATGCCATGAATCAGGTTTGTGTCGGAAGTCCTACATTGAGTGATGGTACAACCAAAACAGTGTATTTAAGTGAAGAACAATCTTCATCTCCTGATCTTCTTCCTGAGTTAGACACAAACTCAAATTCTGTCACTGGTGATGGGGTAGTTGTTGTTGCTGAGAGGAACCTTTCCAGGTCAAATTCCACGGGGCATTCTCTTGTGGGTGTGGAGAGGTACACGTTAAGGTTACCAGAAGACGTGAGGAGGTACATTCTGGTGAACCATGGAAGGAGTGTTCAACGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGATAGTTACGCGGGGAAGAGGGTGGAGAAGAGGTGGGTGATTTGCACGCCGCCGTTTGTGGGGCGCCATGGCTGA 1086 0.4945 MSNFKHFHSLLTLSFPTSKSQTQMPKSNQFHTFHLTLFTFVSLLLLCFSTAQAQSSMEPVPTYITHHNWEPSVAITVGAIIFALLVMGILSIYLRRCAESRIIITTQTTTTVPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCQVAITVPTLHDEEVSGSEETMAEPNQNTNTNHAMNQVCVGSPTLSDGTTKTVYLSEEQSSSPDLLPELDTNSNSVTGDGVVVVAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEDSYAGKRVEKRWVICTPPFVGRHG* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00568 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Lapu4g00568 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 50 309 - -
Lapu4g00568 361 CDD RING-H2_EL5-like 147 190 - -
Lapu4g00568 361 Pfam Ring finger domain 147 190 IPR001841 -
Lapu4g00568 361 FunFam E3 ubiquitin-protein ligase ATL6 108 196 - -
Lapu4g00568 361 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lapu4g00568 361 SUPERFAMILY RING/U-box 133 196 - -
Lapu4g00568 361 SMART ring_2 148 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00568 Lapu-Chr4 5796363 5798175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00568 41 315 Rapid Response to Elicitors AT3G05200 38.889 9.16e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00568 K10664 - gmx:100782532 473.396