Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00567 ATGAACAACATCATAGTACTCCTCTTCCTCCTCGCATCATCATCTTCTTCTTCTACAGTGTCCTGTACCACACGCGCTCAGTCCCCTTCACCTGTAACGCCTCATGGCGCGTCCAACGACGACACCCTCGAAGCAACGCTTCTCATGTCACTCGCCATCTTCGTTTTCGCCATTCTCATCACCGGATTCTGCTCCATCTTCATCCGCTACGTATCCTACCAACACCACGCGCTTCCGCAAACCACGCGCGGACTCGACCCGCGCGTGCTCGCCACGTGCCCCGTCATGTCCTACTCCGCACTGAAACTGAATCACCTCCAGCAAAACGCGGCGCTGCAGTGCGCGGTGTGTCTGGCGGAATTCGCCGACGCCGACGCGCTCCGCCTGATGCCGAAGTGCGGTCACGTGTTCCACACGCGCTGCATCGAGGCGTGGCTGGCGGCGCACGTGACGTGTCCCGTGTGCCGCAGCGATGTGAGCGGGGAAACGAAAGGGGAGACACGTGCGCGGCACGTGTCGGAAGGAGGTTCTGTGAGAGACTTTGGTATCCTTGTTGGGTCGCATTCTACTGGTCACTCTTCAGAGGGGTTTTCTGAGAAATTTCATGAGGAAGTGAAGCAGAAGGTTCTAGAAGATCGCGAACGTGGTAGTTCCATGATGATGAGTCGTTCGGGCAGTTACGACGTCGTTTTGGGCATTGGGTTTTGTTGA 711 0.5696 MNNIIVLLFLLASSSSSSTVSCTTRAQSPSPVTPHGASNDDTLEATLLMSLAIFVFAILITGFCSIFIRYVSYQHHALPQTTRGLDPRVLATCPVMSYSALKLNHLQQNAALQCAVCLAEFADADALRLMPKCGHVFHTRCIEAWLAAHVTCPVCRSDVSGETKGETRARHVSEGGSVRDFGILVGSHSTGHSSEGFSEKFHEEVKQKVLEDRERGSSMMMSRSGSYDVVLGIGFC* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00567 236 FunFam E3 ubiquitin-protein ligase ATL6 73 162 - -
Lapu4g00567 236 SUPERFAMILY RING/U-box 101 160 - -
Lapu4g00567 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 166 - -
Lapu4g00567 236 Pfam Ring finger domain 113 156 IPR001841 -
Lapu4g00567 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 161 IPR013083 -
Lapu4g00567 236 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lapu4g00567 236 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00567 Lapu-Chr4 5777907 5779492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00567 5 226 Rapid Response to Elicitors AT3G05200 31.206 1.53e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00567 K10664 - gmx:102665105 239.58