Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00558 ATGGTGTACTGCGGCGTCTCCGATGGACTCGTGAACTTCTGGGAGCGCGAGAAGGGCTACACGCACGGCGGCGTCCTCAAGGGGCACAAGCTCGCCGTGCTGTGTCTCACCGCCGCGAGGACAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATCGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCGATTCAGATGGCAACCATTTCCCTTGGCTTGCAGCAGTGTGATGTCATTGGCATTGCCGAGACTGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCTCCCATGAGCGAGGACAACGAGGCTGAGGCTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATCGAGGATGAGACTGTTAAGTTTGCGTAG 477 0.5744 MVYCGVSDGLVNFWEREKGYTHGGVLKGHKLAVLCLTAARTEDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKAGYKTPSPIQMATISLGLQQCDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEAPYAVVMAPTRELAQQIEDETVKFA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00558 158 PANTHER RNA HELICASE 49 157 - -
Lapu4g00558 158 Gene3D - 36 158 IPR027417 -
Lapu4g00558 158 Coils Coil 155 158 - -
Lapu4g00558 158 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 58 86 IPR014014 GO:0003724
Lapu4g00558 158 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 158 IPR014001 -
Lapu4g00558 158 Pfam DEAD/DEAH box helicase 83 157 IPR011545 GO:0003676|GO:0005524
Lapu4g00558 158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 157 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00558 Lapu-Chr4 5679183 5679813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00558 68 158 Eukaryotic Initiation Factors Gene Family AT5G11200 39.560 8.75e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00558 K12858 - gmx:100799264 214.157