Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00557 ATGGCCCCGCCGCCTCCGGTGGAACATAACGGCGAATCCACCGCCTCTGCCTCTGCCGCTGCAGACTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGATGACGTTATCTCCTGGAACGACGACGGATCAACGTTCATCGTTTGGAACCCGACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACTTACGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTCTCCAACGAGTATTTCCGCCGAGGGGAGAAGCGGCTTCTGAGCGAAATTCAACGGCGGAAGATCTCGTTACCGGCGCCGTCTCCGTCTCCGTCAGCGCTGGCGACGATTGCTGTTCCGGCGCCGATGCCGTTGACTGCGATTCCGATTATATCGCCATCGAACTCCGGCGAGGAGCAAGTGATTTCGTCAAACTCGTCACAGTCGCTCGCGCCGACGGAACTCATCGACGAGAACGAGAGGCTGAGGAAGGAGAACGTTCAGTTGACGAAAGAGCTCGCGGAGATGAGATCTCTCTGCAACAATATCTATTCTCTCATGTCAAATTACGCGAACGGTAACCCAAACGGAAACGGTAACGTAAGTTACCAAACGGACGGCGGTGCCGGTGGCGCGCAGGGAAGTAGGGAGTCCGGCATGACGGCGGTGAAGCCGCTAGATTTGATGCCGGCGAAACGGGTTTCCGGCGAGGACGCGGGTGAGGAGATGAATCCGAAGTTGTTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGAAGTGGTGGAGATTGCGGAGAAGGAGGATGTGAAGAAGAGAAAGATACGCTGCTGCGTCTGCATCACCCTGGTCCTGCGGACGTGAAACCTGAGCCGCTGGATTGCCAGAACCAACGCGAGAATCAGGAAACGCCGTGGTTGAGTCAGTGTCACATAGCAAATCAGAGGGTGTGTAACTGA 1026 0.5546 MAPPPPVEHNGESTASASAAADSQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLSEIQRRKISLPAPSPSPSALATIAVPAPMPLTAIPIISPSNSGEEQVISSNSSQSLAPTELIDENERLRKENVQLTKELAEMRSLCNNIYSLMSNYANGNPNGNGNVSYQTDGGAGGAQGSRESGMTAVKPLDLMPAKRVSGEDAGEEMNPKLFGVAIGAKRAREGGGSGGDCGEGGCEEEKDTLLRLHHPGPADVKPEPLDCQNQRENQETPWLSQCHIANQRVCN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00557 341 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00557 341 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00557 341 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00557 341 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00557 341 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00557 341 Gene3D - 23 121 IPR036388 -
Lapu4g00557 341 FunFam Heat stress transcription factor B-4 23 121 - -
Lapu4g00557 341 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00557 341 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Lapu4g00557 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 212 IPR027725 -
Lapu4g00557 341 Coils Coil 179 199 - -
Lapu4g00557 341 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00557 Lapu-Chr4 5635345 5637593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00557 5 341 HSF AT5G62020 47.175 2.56e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu4g00557 HSF_DNA-bind 4.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00557 K09419 - gmx:100812267 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00557 4 5635345 5637593 Lapu4g00557 4 5635345 5637593 ECH