Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00551 ATGGGCTTTCTCCGGCGACTCTTCGGCGCCAAGAAACACCACAATCCGCCACCCTCCGACGGGTCAGCTCCCAAACCCACCAAAGACAAGAAAACGTGGAACTTCGTGAAGCACAGTACGAGGTACAAGTCCACCACGTTGCCCTCACTTAACAACAACAACTTTGACCCTTCTACTTCTTCTGCTCCTTTCTCCGACCCCTTGGATGCCAACAAGCATGCCATCGCCGTCGCAGCCGCTACCGCGGCCGTTGCAGAGGCTGCTCTCGCCGCCGCCCACGCAGCAGCCGAGGTCGTTAGGCTGACCAGCGCCAATGGGCCTGCAGCCGGAAGACCCGCCCCGGCGGCTCATCCCCGGCGGGCGGCAGAGGAAACCGCCGCTGCCGTGAAGATTCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCTTTGAGAGCACTCAAAGCATTGGTGAAGTTGCAATCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACAGATATGCTGAGGCGCATGCAGACTTTGGTGCGACTGCAGTCCCGGGCACGTGCGACACGTGGGAACTTATCAGATAATATGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTTCCTGAAGATTATCAGCACTCACTTTATGCCTATAGTACGAAATTTGATGGATCTATTCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGGACGTTGACTTGGAGAAAGCCCGGTTTGGTTCCCATTGGCTAGATAATTGGATGGAAGAAAATTCTTGGAGCCAAACTAGAGACGGTTCATTGAAAAATGGGCACCTTGATGATGAAAAGAGTGACAAGATTCTCGAAGTGGATACTTGGAAGCCACACTTGAACTCACACCATAGTAGTGGCAGCTCATTTCAGCCAGCACATCATTATTTGTCTTCTGATTACAACAATGATAATTTTGTGGCATATGAGTCTCCCTCAAAACGTTCTTCGAAAACTCTATATCCAAGTCTCTCTTCAAGGGAGGTTCTATCCCTTGGTTCTCTGAAACATCACAAAGGAAAAGAAGAAGCATCTTTGAGAAATGTTGAGGATAGTCCTCAAGCATTCTCTGCTTCCTCTAGGCTTGGAAGTGGTGCAAGGAGAGGTCCTTTCACACCAACTAAGAGTGAGTGTGCATGGAGTGTCTTCAGTGGCTATTCTGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAGAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATGGAGTTTGAGAGATATGGTTCCTCAAGAAGGTCTCTTCAGGGTTTTTGGGATGCGGGACCTAGTTCAGATAGGGATTCTGATTTTAGGAGCAAAGCTTATCCTACCACAAACAGCAGCTTAAACAGAGTTGGGAGTGCCAATTTAAGGTGA 1419 0.487 MGFLRRLFGAKKHHNPPPSDGSAPKPTKDKKTWNFVKHSTRYKSTTLPSLNNNNFDPSTSSAPFSDPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSANGPAAGRPAPAAHPRRAAEETAAAVKIQSAFRGYLARRALRALKALVKLQSLVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVPEDYQHSLYAYSTKFDGSILKRCSSNANFRDVDLEKARFGSHWLDNWMEENSWSQTRDGSLKNGHLDDEKSDKILEVDTWKPHLNSHHSSGSSFQPAHHYLSSDYNNDNFVAYESPSKRSSKTLYPSLSSREVLSLGSLKHHKGKEEASLRNVEDSPQAFSASSRLGSGARRGPFTPTKSECAWSVFSGYSGHPNYMSNTESSRAKVRSHSAPRQRMEFERYGSSRRSLQGFWDAGPSSDRDSDFRSKAYPTTNSSLNRVGSANLR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00551 472 MobiDBLite consensus disorder prediction 454 472 - -
Lapu4g00551 472 MobiDBLite consensus disorder prediction 405 472 - -
Lapu4g00551 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 169 IPR027417 -
Lapu4g00551 472 Pfam Protein of unknown function (DUF4005) 362 434 IPR025064 -
Lapu4g00551 472 PANTHER IQ-DOMAIN 5-RELATED 34 436 - -
Lapu4g00551 472 Gene3D - 121 176 - -
Lapu4g00551 472 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Lapu4g00551 472 MobiDBLite consensus disorder prediction 44 64 - -
Lapu4g00551 472 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Lapu4g00551 472 MobiDBLite consensus disorder prediction 413 429 - -
Lapu4g00551 472 SMART iq_5 123 145 IPR000048 GO:0005515
Lapu4g00551 472 SMART iq_5 146 167 IPR000048 GO:0005515
Lapu4g00551 472 MobiDBLite consensus disorder prediction 342 383 - -
Lapu4g00551 472 Pfam IQ calmodulin-binding motif 125 145 IPR000048 GO:0005515
Lapu4g00551 472 Pfam IQ calmodulin-binding motif 148 165 IPR000048 GO:0005515
Lapu4g00551 472 MobiDBLite consensus disorder prediction 1 30 - -
Lapu4g00551 472 MobiDBLite consensus disorder prediction 342 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00551 Lapu-Chr4 5542849 5547667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00551 1 437 IQD Protein Family AT5G62070 46.239 6.94e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00551 - - pvu:PHAVU_004G120200g 782.711