Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00548 ATGGAAGGTCGTAGTGATGTGGGTCTAATTGGAGAAGGTTTTGATACTAGTAATTTGTTGGGAAGGCTCAGGGATGATGACTATGAAAGTCGGTCTGAAAGTGATAATTTTGATGGAGGATCTGGTGATGATCAAGATGTTGGCGATGATCAGCCACAGAGAAAGAAGAAGAAATATCATAGACACACTCCTCAACAAATCCAGGATCTTGAAGCGTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACAGATCTTAGTAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAAAATCGAAGAACCCAAATGAAAACACAATTGGAACGTCACGAGAACATGGTTCTGAAGCAGGAGAATGACAAGCTCCGAGCTGAGAATGGAGTAATGAAGGAAGCTTTGGTAAATCCTATATGTAATAACTGTGGTGGTCCGGCCATTCCTGGTCAAATTTCATTAGAGGAGCACCAAACTAGAATTGAAAATGCTCGATTGAAGGATGAACTGAACCGAATATGTACATTGGCAAACAAGTTTTTAGGCAGGTCCCTCTCATCACTGGCTAGTCCTATGTCTCTGCCACCTACAAATTCTGGTCTGGAGCTTGCTATTGGGAGAAATGGAATTGGTAGCTCAAGCAATTTTGGCATGTCCTTGCCAATTGGCTTTGATGTGGGAGATGGGGCTTTGGGCTCCGCTTCTGCAATGCCAAGTATGAGTGCTAGATCACCAATGGGAATGATGGGAAACGAAATCAATAATGAGAGATCCATGCTTATAGATATTGCAATAAATGCTATGGATGAACTGGTTAAGATGGCTAGACAAGATAGCCCTCTTTGGATTAAGAGTTCTGATGGCAGGAATGAAGTACTGAACTCTGAGGAGTACGCAGGAATGTTTTCTACTTTTGTTGGAACAAAACCTGCTGGTTATGGAACTGAAGCTACAAGAGCAACTGGGGTTGTATTGGCCAGCAGTTTGGGCCTTGTGGAAACATTCATGGATGTGGATCGGTGGTCAGAGATGTTTTCATGTATGGTTGCTAGTGCTTGCACTTTGGATGTATTATCTAGTGGAACGAGTGGAACTAGAAATGGAGCTTTGCAAGTGATGTTGGCTGAGTTTCAAGTGCTTTCCCCACTAGTCCCTACTCGTCAAGTGAGTTTCATCAGGTTTTGCAAGCAACATGCTGAAGATGTATGGGTTGTGGTTGATGTTTCAGTTGACATTATTCGTAATGCATCCAATCCACATCCATTAATGAGTTGTAGGAGGCTTCCTTCTGGTTGTATTATTCAGGATATGCCCAATGGTTTGTCCAAGATTACTTGGGTGGAACATTCCCAGTATGATGAGAGTGGCATCCACCAACTTTGCCGCCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCTCATAAATGGATTGCATCTCTCCTTAGGCAGTGTGATTGCTTGGCAATCCTCATGTCTCCTCTTGGTCCATCCGATGACCCCACAGTCCTTAATCAATCAAATAGGAGAAGCATGTTGAAGCTAGCACAACGCATGACTGAGTACTTCTGCTCAGGGATCTGTGGTTCATCTGCACGTAAGTGGGATGTCCTTCACATTGGTAATCTTGCTGATGACATGAAAATCATGGCCCGGAAAATTGTGGATGACCCAAATGAGGCTCCTGGCATTGTGTTGAGTGCTTCAACTACTGTGTGGATGCCTGTGTCTCGACAAAGGGTGTTTGACTTTCTGCGTAATGAACAATTCAGAGGGGAATGGGACATGTTGTCCAAAGGTGGTCCAATGAAGGAGATGCTTCATGTTCCTAAAGGGCAAGAACATGGAAACTGTATTTCCATTCTTCATTATGCAAATAATGAGAGCAATGTGCTATATCTGCAAGAGTCATGGACTGATGCATCAGGCTCAATGGTAGTATATTCTCCAATCAACATGCAGTCCTTGAACATGATGATGAGCTGTGGAGATTCATCATTCGTTGCTCTCCGTCCCTCAGGCTTTGCTATTCTGCCAGATGGCCACTCAAACAATAGTGACAACAGTGACGGTGGCAACAGTTGCTTACTAACAGTTGGGTTACAAATGTTGCAGAATGACAACCAATCAGCTAAGTTCACCATGGAATCAGTTCAAACTGTTAATTCCCTCCTCTCATGCACCATTCAGAAGGTCAAAGATGCATTAGGAGTTGCATGA 2232 0.4364 MEGRSDVGLIGEGFDTSNLLGRLRDDDYESRSESDNFDGGSGDDQDVGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALVNPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLASPMSLPPTNSGLELAIGRNGIGSSSNFGMSLPIGFDVGDGALGSASAMPSMSARSPMGMMGNEINNERSMLIDIAINAMDELVKMARQDSPLWIKSSDGRNEVLNSEEYAGMFSTFVGTKPAGYGTEATRATGVVLASSLGLVETFMDVDRWSEMFSCMVASACTLDVLSSGTSGTRNGALQVMLAEFQVLSPLVPTRQVSFIRFCKQHAEDVWVVVDVSVDIIRNASNPHPLMSCRRLPSGCIIQDMPNGLSKITWVEHSQYDESGIHQLCRPLVSSGIGFGAHKWIASLLRQCDCLAILMSPLGPSDDPTVLNQSNRRSMLKLAQRMTEYFCSGICGSSARKWDVLHIGNLADDMKIMARKIVDDPNEAPGIVLSASTTVWMPVSRQRVFDFLRNEQFRGEWDMLSKGGPMKEMLHVPKGQEHGNCISILHYANNESNVLYLQESWTDASGSMVVYSPINMQSLNMMMSCGDSSFVALRPSGFAILPDGHSNNSDNSDGGNSCLLTVGLQMLQNDNQSAKFTMESVQTVNSLLSCTIQKVKDALGVA* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00548 743 SMART START_1 267 491 IPR002913 GO:0008289
Lapu4g00548 743 MobiDBLite consensus disorder prediction 1 64 - -
Lapu4g00548 743 SUPERFAMILY Bet v1-like 513 707 - -
Lapu4g00548 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 740 IPR042160 -
Lapu4g00548 743 Gene3D - 43 129 - -
Lapu4g00548 743 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Lapu4g00548 743 Gene3D - 266 474 IPR023393 -
Lapu4g00548 743 SMART HOX_1 55 117 IPR001356 GO:0003677
Lapu4g00548 743 Coils Coil 107 127 - -
Lapu4g00548 743 CDD homeodomain 56 113 IPR001356 GO:0003677
Lapu4g00548 743 MobiDBLite consensus disorder prediction 19 38 - -
Lapu4g00548 743 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Lapu4g00548 743 Pfam START domain 268 490 IPR002913 GO:0008289
Lapu4g00548 743 SUPERFAMILY Bet v1-like 261 491 - -
Lapu4g00548 743 SUPERFAMILY Homeodomain-like 37 113 IPR009057 -
Lapu4g00548 743 CDD START_ArGLABRA2_like 262 489 - -
Lapu4g00548 743 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Lapu4g00548 743 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Lapu4g00548 743 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00548 Lapu-Chr4 5512520 5515866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00548 24 740 Homeobox Transcription Factor Family AT3G61150 53.586 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu4g00548 START 1.8e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00548 K09338 - gmx:100820113 1191.41