Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00540 ATGCCCCCCATGACACCTTCGCGTGTGACAGGAGGGTTAACCCAATCATCATCACATTCTGGAATTTTCTTTCAAAGAGATGGGCTGTCACAGAGTGTAGTTAACTCTCACTTAAGCTCATCTTTTGTTAACTCATCTAGCACGGTTCTGGGAGCCGGTCATTCAAACCTGGGTCTGGTTTCTGGGGATATGAATAATGCAGTTCTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGTCCCCATTTGCAGAGAAGTGCCAGTGTTAACACGGACTCATACTTAAGATTACCTGCCTCTCCCATGTCATTTACGTCAAATAATATTAGTATTTCTGGCTCATCCGTGATTGATGGTTCCTCTGTAGTACACCAGAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGCCAGTCTTCCCTCCATATGGGTGCACACATCCCAGGATCTTTCATTCATGATCCAAATAATGTGTCTCAACTGTCAAAGAAACCTAGAATGGATATCAAACAGGAAGATATAATGCATCAGCAGGTTATCCAACAGATTCTTCAGAGACAAGATTCCTTGCAATTGCAGGGTCGTAACCCACAGTTACAGGCTTTACTTCAGCAACAACAGAGATTGAGGCAACAGCAACTCTTTCAGTCAATGCCACAATTACAGCGAGTTCATTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAAATGCAAATGAGGCAGCAATTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTAAAGCGCCCATATGATAGTAGTGTTAGTGGGGTTTGTGCTCGTCGACTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCCTATTGGAGAAAATTTGTAGCTGAATACTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTGTATAACAATGTTGGGCATCATGCACTTGGTGTTTTTCCCCCAGCAGCAATGGATGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAGAGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAGTGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTTTGTTTTTGGACTTGCCGCGTGAAATAAGATTTCCTTCGGGTGCAATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGCCAACTTCGCATCACATTCACTCAAGATTTGAAGATATTATCATGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTATTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAGTTCATGTAGCTCAAAAATGCCAGAGTAATATTGCTGAAAGTGGGGCAGACGGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCGGGGCGCCAGCTTGCAAAAATTTTAGAGTTGCAATCACTTAATGACTTGGGCTTTTCTAAAAGATATGTGAGATGTTTGCAGATATCGGAGGTTGTCAACAGCATGAAAGACCTAATTGATATCTGTTCAGAGCACAAAATTGGGGCAATTGAGAGTTTGAAAAATTATCCTCGACTAGCAACAGCCTCAAAGCTCCAGATGCAAAAGATTCAGGAAATGGAACAGCTGGCAAGTGTTCATGGTCTGCCAACTGACAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCACATAAACAGCACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTTAGCACTCACCAACTACCAAAATTTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGAGAAGGATCCTCGTTCAATAATTCTAACCCGAGTCCCTCTTCTTCTTTGCAAGGAGCTGGTTCTTCTTTAATCCCAGGCTCAATGCAAAACTCGCCTGTAAGCGGTTTCCCAGGTCCCCATCTACCCTCACAGCAGCAGCAGCAGCAGCAACTTCTTCAACAGCGCACATTAAGTGCAAATGGTTTACTGCAACAAAATCATTCGCAGGGGTCCCAAGGAAATCAAGCCCTGCAGCAGCAGATGATCCAGCAACTTGTGCAGGAAATGTCAAATAACAATGGGGGAATGCAATCCCAGTCTCTTGGTGGACCCAATGCAAATGGGAATATGGTAAAAAATGCAATGGGTTTCGGGCATGCTCCGTCCTTAAGTGGAGGTTCTGTCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAATAGCTTCAAAACCGCTTCAAACAGTGATTCTTCTGCAGCAGGTGGCAACAATGGATTCAACCCAAGAACATCTGATATGCCACAAAGTCTACATTTGCAAGGTGTGGTTCAAGATATTGGTCATGAGTTCGCGGATAGCTCCTTCTTTAACAGCGATCTTGATGATAACATGGGTTTTGGCTGGAAGGCATGA 2604 0.4412 MPPMTPSRVTGGLTQSSSHSGIFFQRDGLSQSVVNSHLSSSFVNSSSTVLGAGHSNLGLVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVHQSSHQDQNVQQLQQNQQQLQGASSATSLPASQTGQSSLHMGAHIPGSFIHDPNNVSQLSKKPRMDIKQEDIMHQQVIQQILQRQDSLQLQGRNPQLQALLQQQQRLRQQQLFQSMPQLQRVHLQQQQQQQQQQQQQQQQQMQMRQQLQQQVMQPSSAVKRPYDSSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYNNVGHHALGVFPPAAMDAWQCDICGSKSGRGFEATYEVLPRLSEIKFGSGVIDELLFLDLPREIRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRITFTQDLKILSWEFCARRHEELIPRRLVAPQVNQLVHVAQKCQSNIAESGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICSEHKIGAIESLKNYPRLATASKLQMQKIQEMEQLASVHGLPTDRNTLNKLMAMNPGLNNHINSTHNMVNRGALSGSAHLALTNYQNFLMRQNSMNSSPGSLQREGSSFNNSNPSPSSSLQGAGSSLIPGSMQNSPVSGFPGPHLPSQQQQQQQLLQQRTLSANGLLQQNHSQGSQGNQALQQQMIQQLVQEMSNNNGGMQSQSLGGPNANGNMVKNAMGFGHAPSLSGGSVNVPGNNGPISRNNSFKTASNSDSSAAGGNNGFNPRTSDMPQSLHLQGVVQDIGHEFADSSFFNSDLDDNMGFGWKA* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00540 867 MobiDBLite consensus disorder prediction 135 179 - -
Lapu4g00540 867 MobiDBLite consensus disorder prediction 135 200 - -
Lapu4g00540 867 MobiDBLite consensus disorder prediction 652 715 - -
Lapu4g00540 867 MobiDBLite consensus disorder prediction 788 832 - -
Lapu4g00540 867 Pfam LIM-domain binding protein 312 572 IPR029005 -
Lapu4g00540 867 PANTHER LIM DOMAIN-BINDING PROTEIN 61 848 IPR029005 -
Lapu4g00540 867 MobiDBLite consensus disorder prediction 789 832 - -
Lapu4g00540 867 Coils Coil 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00540 Lapu-Chr4 5437753 5444354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00540 307 576 C2H2 Transcription Factor Family AT1G43850 61.111 3.72e-108 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00540 - - gmx:100816886 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00540 4 5437753 5444354 Lapu4g00540 4 5437753 5444354 ECH