Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00539 ATGCCCCCCATGACACCTTCGCGGGTGACAGGCGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCTGTCACAGAGTGTAGTTAACACTCACTTAAGCTCATCTATTGTTAACTCGTCTAGTACAGTTCCGGGAGCTGCTCGAACAAACCTGGGTCCGGTTTCTGGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCAGCGCCAAGTGTTGGAGCTAGTTCCCTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCCAGTGTTAACACGGACTCATACTTACGATTACCCGCCTCACCCATGTCATTTACATCAAATAATATCAGTATTTCTGGCTCATCAGTGATTGACGGTTCCTGTGTAGTGCAACAGAGCTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAGTGCTACATCGATGTCTGCATCTCAACCTGGCCCATCTTCCCTCCATATGGGTGGACAAGTTCCAGGATCTTTCATTCATGATCCAAATAATGTGTCTCAATTGTCAAAGAAACCCAGACTGGATATCAAACAGGAAGATATAATGCAGCAGCAGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCACAGATACAGGCTTTACTTCAACAGCAGCAGAGACTAAGACAACAGCAAATCTTTCAGTCGATGCCCCAATTACAGCGGGTGCACTTACAACAACAACAACAGCAGCAACAACAATTACAACAGCAACAACAACAAATGCAATTGAGGCAGCAATTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTCAAGCGCCCATGTGACAGTGGTGTTAGTGGGGTCTGTGCTCGTCGACTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCCGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTGTATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGTGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCGGTGGAGTGATTGATGAACTTCTGTTTCTGGATTTGCCTCGTGAAATAAGATTTCCATCTGGTGCGATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCAACTTCGCATCATATTCACTCAAGATTTGAAGATTTCATCTTGGGAGTTCTGTGCAAGACGGCACGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCGCAGGTCAACCAATTAGTACAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGACAGTGGAGCAGATGGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCGGAGGTTGTCAACAGCATGAAAGATCTCATAGATATCTGTGCAGAGCACAAAACTGGGGCAATCGAGAGTTTGAAAAATTATCCTCGACTAACAACAGCCTCGAAGCTCCAGATGCAAAAGATGCAGGAAATGGAACAGATGGCAAATGTTCATGGTCTGCCAACTGATAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCAGATAAACAACAGTCAAAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTTAGCACTTACCAACTACCAAAATCTTCTCATGAGACAAAATTCAATGAATTCTAGCCCTGGATCCCTTCAGCGAGAAGGATCGTCATTCAATAATTCTAACCCGAGTACCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAATTCCAGCCTCAATGCAAAACTCACCTGTAGGTGGTTTCCCGGGTCCTCATCTACCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCTCCTTCAACAGCGCACATTAAGCGCAAATGGTTTACTGCAACAAAATCATTCACAGGGGTCCCAAGGAAATCAAGCTCTGCAGCAGCAGCAGATGATCCATCAACTAGTGCACGAAATCTCAAATAACAATGGGGGAATGCAATCACAGCCTCTTGGCGGACCCAATGCAAATGGGAATATGGCAAAGAATGCATTGGGTTTTGGGGGCCATACTCCTTCCTTGAGTGGAGGTCCTTCCAATGTTCCACGGAACAATGGACCCATTTCGAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCAGCTGGTGGCAACAATGGATTCAACCCAAGAACGTCTGATATGCCACAAAGTCTACAATTGCAAGATGTGGTTCAGGATATTGGCCATGAGTTTGCGGATAACCCCTTCTTTAACAGTGATCTTGATGATGACATGGGTTTTGGCTGGAAGGCATGA 2619 0.4483 MPPMTPSRVTGGLTQSSSHSGIFFQGDGLSQSVVNTHLSSSIVNSSSTVPGAARTNLGPVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSCVVQQSSHQDQNAQQLQQNQQQLQGASSATSMSASQPGPSSLHMGGQVPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQQQVIQQILQRQDSMQLQGRNPQIQALLQQQQRLRQQQIFQSMPQLQRVHLQQQQQQQQQLQQQQQQMQLRQQLQQQVMQPSSAVKRPCDSGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLNEIKFGGGVIDELLFLDLPREIRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKISSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIADSGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICAEHKTGAIESLKNYPRLTTASKLQMQKMQEMEQMANVHGLPTDRNTLNKLMAMNPGLNNQINNSQNMVNRGALSGSAHLALTNYQNLLMRQNSMNSSPGSLQREGSSFNNSNPSTSSALQGAGPSLIPASMQNSPVGGFPGPHLPPQQQQQQQQLLQQRTLSANGLLQQNHSQGSQGNQALQQQQMIHQLVHEISNNNGGMQSQPLGGPNANGNMAKNALGFGGHTPSLSGGPSNVPRNNGPISRNNSFKTASNSDSSAAGGNNGFNPRTSDMPQSLQLQDVVQDIGHEFADNPFFNSDLDDDMGFGWKA* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00539 872 Pfam LIM-domain binding protein 314 574 IPR029005 -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 143 177 - -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 653 718 - -
Lapu4g00539 872 Coils Coil 265 285 - -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 758 773 - -
Lapu4g00539 872 PANTHER LIM DOMAIN-BINDING PROTEIN 48 858 IPR029005 -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 653 694 - -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 790 842 - -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 143 196 - -
Lapu4g00539 872 MobiDBLite consensus disorder prediction 758 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00539 Lapu-Chr4 5427340 5434615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00539 309 583 C2H2 Transcription Factor Family AT1G43850 60.727 1.64e-108 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00539 - - pvu:PHAVU_004G121400g 1366.67