Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00532 ATGGCTTCTGCAACACTCTCTCTCCATTACCCTCTTCTTCTTCATTCTCCTCTTTCTACCAGAATTACCAAACCACCCCTCTCTCCCCGACCCCTTCTTCTCCCTCACCCTCTCCACTCGCGATTCCTCCTCCCTCCGCCACGCGCCTACGTTACCGCACCTGCATCCGACCCCAATTTCGGAGACCCGGATCCCAAGCTCAACGCGTTGGGTTCGGAGAACGCGAAGCCGCGAAACGTGATCTCGTGGAGCCTCCTCTGCACGCTTCTCATGAACCACAAACTGCGCTTGGCTCTCGTGGTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTATGGAAGCTACTTACTAAAATTGGAGTTCTGTATGCCTTGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCCAGACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACCTCTGATTTGGATTCTCTTAAAAATATTGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATTCATACTTTTTTCTTTATCACCGCAACTGGCACCCGTTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTGTATAAGAGATCTACATTGCCAGTGTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGATTGTGTAACTGAAACTTTTTCAGCTATTCGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATGTTTCTTTAATAGCATTATATTGTCTCGGAGGAAGCAAGGTTAAGGCGGGTGAGCTCTCTGTTGGAACCATGGCATCTTTTATCGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGATCTTTTGCAGCTATTGAGAGGATCAACTCTGTTTTATCTGGAGTTCAAGTTGATGATGCCCTGGCTTACGGCTTAGAAAGAGAACTGCGACAAAAAACAGTGGATGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACTGAGAATAATCAAAAAAATTATTTTCACTACATGTCAGCTCTTAAAACATCGAGCAATTTGTTTAGCTTAGCTTGGTCCGGAGATATTTGTCTTGAAGATGTATATTTCTCTTATCCGTTAAGGCCGGATGTGGAAATCTTACGTGGATTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCGCGTTTTTATGAGCCAACAAGTGGTTGTATAACAGTTGCAGGCGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTTTCTAAAGAAGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTCGTCGGTGAGCGTGGAGGCCTATTGAGTGGCGGACAGAGACAGAGAATTGCTATTGCCCGGGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCTCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGATGCTCTCAACCATTTGATGAAGGGAAGAACCACATTAGTAATAGCCCACAGATTAAGCACAGTGCAAAATGCATATCAAATTGCAGTCTGTTCTGACGGGAGGATTGCAGAATTAGGCACTCATTTTGAGCTACTGGCTAAGAAGGGCCAATATGCTTCACTGGTCGGCACACAGAGGCTTGCCTTTGAATAA 2109 0.4343 MASATLSLHYPLLLHSPLSTRITKPPLSPRPLLLPHPLHSRFLLPPPRAYVTAPASDPNFGDPDPKLNALGSENAKPRNVISWSLLCTLLMNHKLRLALVVATLFACSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTKIGVLYALEPLLTIIFVINMNIVWEKIMSRLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPVLGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYVSLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSFAAIERINSVLSGVQVDDALAYGLERELRQKTVDDENYKLVLSNISTENNQKNYFHYMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSDGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00532 702 Gene3D - 456 699 IPR027417 -
Lapu4g00532 702 SMART AAA_5 485 679 IPR003593 GO:0016887
Lapu4g00532 702 CDD ABC_6TM_TAP_ABCB8_10_like 104 389 - -
Lapu4g00532 702 Pfam ABC transporter transmembrane region 99 368 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00532 702 Gene3D ABC transporter type 1, transmembrane domain 67 395 IPR036640 GO:0005524|GO:0016020
Lapu4g00532 702 FunFam ABC transporter B family member 28 74 397 - -
Lapu4g00532 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 458 696 IPR003439 GO:0005524
Lapu4g00532 702 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 66 700 IPR039421 -
Lapu4g00532 702 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 456 700 - -
Lapu4g00532 702 SUPERFAMILY ABC transporter transmembrane region 86 394 IPR036640 GO:0005524|GO:0016020
Lapu4g00532 702 Pfam ABC transporter 476 627 IPR003439 GO:0005524
Lapu4g00532 702 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524|GO:0016887
Lapu4g00532 702 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 98 381 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00532 702 CDD ABC_MTABC3_MDL1_MDL2 458 697 - -
Lapu4g00532 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 697 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00532 Lapu-Chr4 5247169 5256177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00532 455 702 Calmodulin-binding Proteins AT2G36910 54.980 7.33e-75 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00532 4 5247169 5256177 Lapu4g00532 4 5247169 5256177 ECH