Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00530 ATGGCTGTTGCCAAGAGCAACAGCAACTATGAACCTTGTACTTCATACAATTGTTACAAAGTAGCAGGTTTGACTGGGACCATATTAGACACAAGTCAAGTCTCTAATTTGAAAGATCGGTACATTCTTGGAGAGCAATTGGGTTGGGGGCAGTTTGGTGTCATAAGGGCATGTTCTGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGATGATTTGAGGAGTGTCAAACTTGAGATAGAGATAATGGCTAGGCTATCTGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGTTTTGTTCACCTGGTGATGGAGCTTTGTGCTGGAGGAGAGCTTTTTCACCGATTAGAGAAGCATGGATGGTTTTTAGAATCTGAAGCCAGGGTTCTCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCTTCATCTCCTATTAAATTGGCAGATTTTGGACTGGCAACCTACATCAAGCCTGGTCAAAGTTTGCACGGTTTAGTTGGGAGTCCATTCTACATAGCTCCAGAGGTATTAGCTGGCGCTTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTAATTCTTTATATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTGAAGTTTCCATTGGAACCTTGGGATCACATTTCTGAATCAGCTAAGGATTTAATCAGGGGAATGCTGTGCACTGACCCTTCTCGAAGGCTAACTGCCCAAGAAGTTTTAGATCATTGCTGGATGGAAAACAACCAAACCAATCCAGAACAACTAAGTGAAAATCAAATTGAAAGTTGCGAAGAGTGGGATGTTGGTGGCAGCTCATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATCAGCTTTGGCGCTGGCTCACCTACTTGTGATGCTCAGTCGCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACACCATGTCTACTATCTGGTGGGTTTTCATTCAAGAGTGTTGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCTATTCCCTCGATGCTTAGCTTTTCATTCCTCAGCCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTAGAGTGTTCAGCTAACATGTCAGATGTAAATGCAGTTGCAGGAGAAACTAGTTTGGGAAAGTTACTTTTACTACAAGATTCTCATCTTTGCATTGAACACAATGTTAAAGAAACGAATCGCAGGCCTGTAGAGGCCAAAAGGTCAAGTGGAATGAATGGACACAAGGTGCTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGAGAGTGTGAGCAACTTGACCTTGTGGTGACTGAATCAGTCATCCGTTGGTCATCATGCACTCAACTACCTACATCTCTGAGATCATCTCTTGTTTGCTAA 1557 0.4348 MAVAKSNSNYEPCTSYNCYKVAGLTGTILDTSQVSNLKDRYILGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFLESEARVLFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDHISESAKDLIRGMLCTDPSRRLTAQEVLDHCWMENNQTNPEQLSENQIESCEEWDVGGSSFSASFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLEEPVTPCLLSGGFSFKSVGDSSGLEFSSPIPSMLSFSFLSPSPVVEHKSCKLECSANMSDVNAVAGETSLGKLLLLQDSHLCIEHNVKETNRRPVEAKRSSGMNGHKVLGIHSKRNRTIGLGECEQLDLVVTESVIRWSSCTQLPTSLRSSLVC* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00530 518 FunFam Calcium-dependent protein kinase 1 43 126 - -
Lapu4g00530 518 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Lapu4g00530 518 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Lapu4g00530 518 Pfam Protein kinase domain 43 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00530 518 CDD STKc_CAMK 40 298 - -
Lapu4g00530 518 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00530 518 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Lapu4g00530 518 Gene3D Transferase(Phosphotransferase) domain 1 128 327 - -
Lapu4g00530 518 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00530 518 SUPERFAMILY Protein kinase-like (PK-like) 38 362 IPR011009 -
Lapu4g00530 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 315 - -
Lapu4g00530 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00530 Lapu-Chr4 5231123 5235565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00530 28 306 EF-hand Containing Proteins AT3G57530 50.179 3.01e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu4g00530 Pkinase 5.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00530 - - gmx:100776088 927.932