Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00527 ATGGGTAAGGGAGGAATGTCAACTGACGATCATGGAGAAGGCAAAGAAGAGAATATGGCTGCTTGGCTTATTGGTATAAACAATCTCAAGATTCAACCTTTCAAGCTTCCTACTCTTGGACCACATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGACACTGAAGTGTGCACACTTTATAGTTAAGGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGTTTGGTGCCTGGTGACCGTGTGGCGATTGAGCCTGGGATCAGTTGCTGGCGATGCGGCCACTGCAAACAGGGTCGATATAATTTGTGTGATGATATGAAGTTTTTTGCTACGCCACCAGTTCATGGTTCCCTGGCTAATCAGATAGTGCACCCTGCAGACCTATGTTTTAAGCTTCCAGACAACGTGAGCCTAGAGGAGGGGGCCATGTGCGAACCCTTAAGTGTTGGTGTTCATGCTTGTAGGAGAGCTAATATTGGACCAGAAACAAATGTGTTGATCATGGGAGCTGGACCCATAGGACTTGTTACACTGCTTGCAGCTCGTGCTTTTGGAGCACCCAAGACTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGTAGATGATATTGTTAAAGTCTCAACAAACATTCAGGATGTGGCTGAAGAAATTGTGCAGATACAAAAGGTTATGGGAGCTGGTATAAATGTAACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCACTGGGTGCTACTCAGCCTGGTGGAAAAGTTTGCCTAGTTGGAATGGGACATTCTGAAATGACTGTCCCACTCACCCCTGCTGCAGCAAGGGAAGTTGATGTGGTTGGAGTTTTTCGCTATATGAACACATGGCCACTTTGTCTTGAGTTTCTAGAGAGTGGCAAAATCGATGTAAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAAAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTGATGCCATCAAGAATCATGAATGTTGGACACTACCTATTTTCATGAATTCCCCCAACTTCATGCAACCTATAAAAATCTTTTATTTTGGAAATAGTCTTGTTATTTTGACAACCATTTGA 1185 0.4363 MGKGGMSTDDHGEGKEENMAAWLIGINNLKIQPFKLPTLGPHDVRVRMKAVGICGSDVHYLKTLKCAHFIVKEPMVIGHECAGIIEEVGSQVKSLVPGDRVAIEPGISCWRCGHCKQGRYNLCDDMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTLLAARAFGAPKTVIVDVDDYRLSVAKSLGVDDIVKVSTNIQDVAEEIVQIQKVMGAGINVTFDCAGFDKTMSTALGATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGVFRYMNTWPLCLEFLESGKIDVKPLITHRFGFSQKEVEEAFETSARGGDAIKNHECWTLPIFMNSPNFMQPIKIFYFGNSLVILTTI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00527 394 SUPERFAMILY GroES-like 18 190 IPR011032 -
Lapu4g00527 394 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Lapu4g00527 394 PANTHER SORBITOL DEHYDROGENASE 17 359 - -
Lapu4g00527 394 Pfam Zinc-binding dehydrogenase 192 323 IPR013149 -
Lapu4g00527 394 Gene3D - 29 350 - -
Lapu4g00527 394 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Lapu4g00527 394 FunFam Sorbitol dehydrogenase 169 309 - -
Lapu4g00527 394 Gene3D - 169 309 - -
Lapu4g00527 394 CDD sorbitol_DH 20 359 IPR045306 GO:0016616
Lapu4g00527 394 SMART PKS_ER_names_mod 25 358 IPR020843 GO:0016491
Lapu4g00527 394 Pfam Alcohol dehydrogenase GroES-like domain 41 152 IPR013154 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00527 31 297 Monolignol Biosynthesis Gene Families AT4G37980 26.978 5.13e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00527 K00008 - gmx:100791559 705.671