Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00518 ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACGTTCTCAAAGCGCAGGAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTTTGTGATGCAGAAGTTGCCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCGTTGAGAGGTATCGTCAATGTCGTTACAGCAAGTCACAGACTGGTGATTCATCGGAACCCGAATCACAGAGTTCATATCATGAATTCTTGAAATTAAGAGCGAAATACGAATCTCTTGAGAGGACCCAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGAATTGCAGAGCCTTGAGAAACAACTAGACATTACACTCGCACTAACTCGACAGCAGCAAACAAAGAAACTCATGGCACGAGCTGATGAATTACGCGAAAAGGTGCACAAATTGGAAGATCTTAACAAAAAATTGGAATCCAAGGAAAAAGATGAATTCTCAAGCCTCATCCTTGACAATAACAATTTTTTTCAATTGCATGCTACACAAGCCGATCAATTTCAATCTGGAACAGCACTAAACACATGGTTTCAACACCAAGAAGTTGCTTCGAAAGAAAGAGCAATTGATATGAGGACAGAGGATAACCAAAGCACTCACAACAAAAGCAATGGATGGTTGTAG 711 0.4107 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDINKIVERYRQCRYSKSQTGDSSEPESQSSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKVHKLEDLNKKLESKEKDEFSSLILDNNNFFQLHATQADQFQSGTALNTWFQHQEVASKERAIDMRTEDNQSTHNKSNGWL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00518 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu4g00518 236 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Lapu4g00518 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Lapu4g00518 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lapu4g00518 236 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lapu4g00518 236 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu4g00518 236 Coils Coil 143 173 - -
Lapu4g00518 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu4g00518 236 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00518 Lapu-Chr4 5056241 5064556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00518 1 170 MADS-box Gene Family AT2G45650 57.059 1.07e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu4g00518 K-box 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00518 K09264 - gmx:100793681 412.535