Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00512 ATGAACTTGAAACAATACTGTTGTTTCCTCTTAGATGAAGGGCAAAGCAAAATTCAGATTGCTAAGAAGAAGAACAGTAGGGATTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTAAGAGCAACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAGGCGTTCAGATTGCAGTGAAGCGGTTGAAGACAATGACTGCTAAGGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATTTGCTGGGATTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATCGTGTATGATTACATGCCTAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCTAAGGAATGTCAGCTAGATTGGGCAAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTAGTGTATTTGCACCATGAGTCAACTCCTCACATCATACATAGAGATATAAAGGCGAGTAATGTTCTTCTAGACTCTGAATTTCAATCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTAGTACCAGATGGTGTGACCCATCTAACCACAAAGGTTAAAGGCACCCTAGGATATTTGGCACCAGAATATGCCATGTGGGGAAAAGTTTCTGAGAGCTGTGATGTTTACAGCTTTGGAATTTTACTGTTGGAGATCATTAGTGCCAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATTGTTCAATGGGCCACACCATATGTCAACAAAGGTCTCTTAAACAATATTGCAGATCCAAGATTGAAGGGGAAATTTGATTTGCAGCAACTGAAAAATGTGATCACTATAGCTCTTAGATGCACTGATACTAGCGCGGATAAGAGGCCTAACATGAAAGAGGTGGTGGATTGGCTGAAGAATGGTGTAGGGAGTGCTACAACTTAG 981 0.4098 MNLKQYCCFLLDEGQSKIQIAKKKNSRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSVYFGRTSKGVQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWARRMSIAIGAAEGLVYLHHESTPHIIHRDIKASNVLLDSEFQSKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWATPYVNKGLLNNIADPRLKGKFDLQQLKNVITIALRCTDTSADKRPNMKEVVDWLKNGVGSATT* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00512 326 CDD STKc_IRAK 52 319 - -
Lapu4g00512 326 Gene3D Transferase(Phosphotransferase) domain 1 122 322 - -
Lapu4g00512 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Lapu4g00512 326 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 121 - -
Lapu4g00512 326 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Lapu4g00512 326 Gene3D Phosphorylase Kinase; domain 1 11 121 - -
Lapu4g00512 326 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00512 326 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 319 - -
Lapu4g00512 326 SUPERFAMILY Protein kinase-like (PK-like) 27 319 IPR011009 -
Lapu4g00512 326 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00512 326 Pfam Protein kinase domain 46 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00512 326 PIRSF ILK 12 322 - -
Lapu4g00512 326 FunFam PTI1-like tyrosine-protein kinase At3g15890 122 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00512 Lapu-Chr4 4937184 4939413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00512 35 318 Receptor kinase-like Gene Family AT4G02010 45.139 1.07e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lapu4g00512 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00512 - - vra:106757402 639.802