Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00511 ATGGATGAAAACAAGAAGTGGATGCATAAGGAGACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCACCGACCTTAGATCTCTTCTGCCTTTAGAATATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTATATCAACCACCTGCAAGATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGCGTTATTGAAGGTCTCTAATTTCAGAAGCATTGGTCCTGAGAATGAAAGCTCTTATACTACTCATCTTCCACCCTTGGTTTTTGTTCATCCTTTCCCTGGAGGCCTTGAGATTATGTGCAGTTATAGCTTCAGGAAAAGTGTGTTTCCCATGTCAAGATTATTGGACTTTCTTCACAAGGAAGGACTTAACGTGGTTAGCACTACTTCCATCAGAAGAGATGGTAGATTCATACATACCATACAATCAGAGGATCCCAATCATCCTAATATGATTGGCACTGATTACTCTGAACTGCAAATAAAGCTTATGGAGGCGTTATCATCTTCAACAATATAG 543 0.4015 MDENKKWMHKETERQRRQEMGKLCTDLRSLLPLEYIKGKRSTSDHVHEAMNYINHLQDKVKQLQAKRDALLKVSNFRSIGPENESSYTTHLPPLVFVHPFPGGLEIMCSYSFRKSVFPMSRLLDFLHKEGLNVVSTTSIRRDGRFIHTIQSEDPNHPNMIGTDYSELQIKLMEALSSSTI* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00511 180 Coils Coil 46 73 - -
Lapu4g00511 180 SMART finulus 10 62 IPR011598 GO:0046983
Lapu4g00511 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 72 IPR036638 GO:0046983
Lapu4g00511 180 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Lapu4g00511 180 CDD bHLH_AtORG2_like 5 75 - -
Lapu4g00511 180 Gene3D - 1 78 IPR036638 GO:0046983
Lapu4g00511 180 FunFam Transcription factor bHLH126 1 84 - -
Lapu4g00511 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Lapu4g00511 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00511 Lapu-Chr4 4926539 4927482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00511 2 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.714 1.21e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu4g00511 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00511 - - pvu:PHAVU_004G124200g 337.806