Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00510 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCCCCCACCAGCAGCAACACAAAATCTCTCAAGATCTGATTCTGGATGATTATGCTTCACTGGATGACAATGTTTCTGAGAAAAAATTCCCTAGAAGCCAACCAAAGAATCTTTTCTATGAGGCAAATCAAAAGAATCACGACTCTAACGACCATATGAAGAAGATGATTCACAAGGAGATTGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCATATGAACGAGGCAGTGAACTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGGTTCCAAGAGAGATGAACTGAAGAAACTCTCCAATCATAGTAATATGGAAGATAGCCAAGAGGGCTTGCACACTTCTTGCAACTTTACTGTCCACGAGAATAATGGTGTTATAGGAATCGAAATCACCAGTGGCTTCAGAGAGCAAAAGCCTAAAGTTTCAAAGTTGCTACAAATACTGATTCAAGAAGGTCTTGAAGTTGTTAGTTGCCTTTCATCAGAAGTCAATGGTAGATTGCTCCACAGTGTGCAGTGTGAGGTTAACAATTCCAATTGTGTAGATCTATCTGAGCTGAGAAGGAAAGTTTCCAAAGTATTTCCAGCAATTAGATGTTCTGATTGA 726 0.4008 MFPLQRGNELVIQFSNSPHQQQHKISQDLILDDYASLDDNVSEKKFPRSQPKNLFYEANQKNHDSNDHMKKMIHKEIERQRRQEMATCYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGSKRDELKKLSNHSNMEDSQEGLHTSCNFTVHENNGVIGIEITSGFREQKPKVSKLLQILIQEGLEVVSCLSSEVNGRLLHSVQCEVNNSNCVDLSELRRKVSKVFPAIRCSD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00510 241 SMART finulus 75 127 IPR011598 GO:0046983
Lapu4g00510 241 CDD bHLH_AtORG2_like 70 143 - -
Lapu4g00510 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Lapu4g00510 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 62 232 - -
Lapu4g00510 241 FunFam Transcription factor bHLH126 61 149 - -
Lapu4g00510 241 Gene3D - 60 155 IPR036638 GO:0046983
Lapu4g00510 241 Coils Coil 118 138 - -
Lapu4g00510 241 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Lapu4g00510 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 141 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00510 Lapu-Chr4 4903042 4904090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00510 64 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.067 2.42e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu4g00510 HLH 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00510 - - gmx:100780888 394.43