Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00504 ATGGCTTCATACGAGATTCTCATCCTCTTTATCGTTGTTAACTTCCTCAACTTTGCTATTACTGAACTACAAGATTATCCTCCACTCTACCAATATTGCTCCAGTGAACAAACCACTGACAATACCTCTCTCCAAGTTAATGTCAAAAAACTTCTTCATAACTTATCTTCTCTGTCTTCTGGTCACACTCAATACAACACCAATTTCTCTTGTGCAAACCCCTCAGACTCCATCTATGGCTTGTTCATGTGTAGGGGTGACACTTCACATAATATCTGTCAACAATGTGTCCAAAGTGCACAGAACAAACTATCCTCAGATTGCTCTTTGTCCAAAGAATCTATCACTTGGTACGAAGAGTGCATGGTTAGGTATTCAACCAACTACCTCTTCTCCACCGTGGCCACAACCCAGTGCAACACTGGCAAGGTGGTCTCAAACCCTGAAAGCTTCATGCAGTTATGTTTTCTGACCATGAACCAAACGGCAGATGATGCAGCACGTGCTCCAAATAACAAGATGTTTGCTACGAGGGAAGCACACGTGTCCGAATTCCAAAATCTTTATTGTCTAGCTCAATGCACACCAGATCTATCACCCAATGATTGCAGAATCTGCCTCGATGAAGCCATAAGCAATATTCCAAAGTCTCCACAATGTTCTGGAGCGAGACTTGGAGGGAAAGTTCTTTACCCCAGTTGTAACATTAGGTATGAATCTTATCCTTTTTATCCTGATCCATCAACAAAACCTTCAGCTAAGCTTGTTCCCGAGACCAAAACCTCTCATCTTGCAGATTTAACGTTTTCAGAAGACCTTCTTTATCTCTCCCACAATTGCTCAAGTAACAAAACCCTCAGCTCCAATAACACTTTGCAAACAAGCCTCACCACCCTCTTTTCTTACCTATCTTCCAACGCCACCAACAAGAAATATCACCGAGCTGATGTGAACGGCACAGTTCATGGCCTCTTCATGTGCCGAGGTGACGTTCCCTTTGGCGTGTGTAAAAAATGCGTCCAAAATGCAACACATCAAATAGCATCGGATTGCAACTCCTTCCAAGAGGCTATAGTTTGGTACAGCCATTGCATGCTCCGCTATTCCTACCGAACTTTTTTCAGAACAGTCGAGACAAGTCCTATGTTTTCGGAGCTGAATATCACTAGCAGAAACGAGGAACAAAGTTTCTTCAGTGTTACGTTAGCGAAGACGCTAGATAAGGTGGCAGTTATGGCAGGAGACAGTGATGACAGATTTGGAAAATACTCAATGAAGCTGAATGATGTACAAACCCTTTATACTCTCGCTCAATGCACGCTGGATTTGCCTACTGACGATTGCAAGGGTTGCTTGGGAATTTTGATTGGAACAGAAATACCATGGTCTCGTTTGGGAAGCATAGGGGGAAGAGTTCTATATCCTAGTTGCAATCTCAGGTTTGAGTTTTCCAAGTTTTACTGGGACGATGAAGTTTCACCCCCAATACCAGGAAAGAAAGCAGAAAACGTACGAATAATTATATTAATATTACTTATTGTGCCCACAATTATTTCGATGATTCTCTTCTTCCTGGCTTGTTACTTTCAAAGAAATAGAAGAAAGAGCCATACGACTATTCTCAAGGAAAATTTTGGTCATGAAATTGCAACTTTGGAGCCCTTACACTTCGATTTGAATGCAATAGAGTTAGCAACTAATAACTTTTCCAAGGACAACAAGATAGGTAGAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTCTTGATGGACGACAAGTTGCTGTAAAAAGACTTTCAAAAAATTCCAAACAAGGTGTTATTGAGTTCAAGACTGAAGTTTTATTGATTGCAAAACTTCAACATCGAAATCTAGTAGAATTTATTGGGTTTTGCCTCCAACAAGAAGAAAAAATACTTATATATGAATACGTGCCGAATAAGAGTCTTGATCACTTTTTATTTGATTCCCAACCACAAAAATTGTTAAGTTGGTGTGAACGTTACAAAATTATAGGAGGTATTGCTCGAGGAATTGTTTATTTACATGAACATTCTCGACTCAAGATTATACATCGTGATCTTAAACCGAGCAATATTCTACTGGATGAAAATATGACTCCAAAAATTTCAGATTTTGGCATTGCTAGAATTGTTGAAATAAGTCAAGACCAAGAAAATACAGATTTAATTGTTGGAACATGTGGTTATATGTCTCCAGAGTATGCAATGTTTGGACAATTTTCTGAAAAGTCAGATGTTTTTAGTTTTGGAGTAATGGTTTTAGAAATTATCACGGGAAGAAAGAATATGCATTCTCCTGAACCACGTCATGTAGCTGATGGCCTCTTAAGTTATGTTTGGAAACAATGGAGGGCTCAAACACCATTAAACACATTGAATTCAAATATTAAGGAAAATTATGCTGAAATTGAAATTATAAAGTGTATTCAGATTGGTTTATTATGTGTTCAAGAAAATCCCGATGTTAGACCAACAATGGTAACAATTGTTTCATATCTTGATGGTCATTTTAGTGAATTGCCAACTCCACAAAAGCCTGCTTTTTTCTTGCATGGAAGAATTGGTTCAAAATCTATTGGAAGGAAATCTAGTTCTAGGAAATCTATGCATATTTCTACACCATTATCAATCAATGAAATGTCCACAAGTGAATGTTTTCCTCGTTAG 2691 0.3857 MASYEILILFIVVNFLNFAITELQDYPPLYQYCSSEQTTDNTSLQVNVKKLLHNLSSLSSGHTQYNTNFSCANPSDSIYGLFMCRGDTSHNICQQCVQSAQNKLSSDCSLSKESITWYEECMVRYSTNYLFSTVATTQCNTGKVVSNPESFMQLCFLTMNQTADDAARAPNNKMFATREAHVSEFQNLYCLAQCTPDLSPNDCRICLDEAISNIPKSPQCSGARLGGKVLYPSCNIRYESYPFYPDPSTKPSAKLVPETKTSHLADLTFSEDLLYLSHNCSSNKTLSSNNTLQTSLTTLFSYLSSNATNKKYHRADVNGTVHGLFMCRGDVPFGVCKKCVQNATHQIASDCNSFQEAIVWYSHCMLRYSYRTFFRTVETSPMFSELNITSRNEEQSFFSVTLAKTLDKVAVMAGDSDDRFGKYSMKLNDVQTLYTLAQCTLDLPTDDCKGCLGILIGTEIPWSRLGSIGGRVLYPSCNLRFEFSKFYWDDEVSPPIPGKKAENVRIIILILLIVPTIISMILFFLACYFQRNRRKSHTTILKENFGHEIATLEPLHFDLNAIELATNNFSKDNKIGRGGFGEVYKGILLDGRQVAVKRLSKNSKQGVIEFKTEVLLIAKLQHRNLVEFIGFCLQQEEKILIYEYVPNKSLDHFLFDSQPQKLLSWCERYKIIGGIARGIVYLHEHSRLKIIHRDLKPSNILLDENMTPKISDFGIARIVEISQDQENTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGRKNMHSPEPRHVADGLLSYVWKQWRAQTPLNTLNSNIKENYAEIEIIKCIQIGLLCVQENPDVRPTMVTIVSYLDGHFSELPTPQKPAFFLHGRIGSKSIGRKSSSRKSMHISTPLSINEMSTSECFPR* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00504 896 SMART serkin_6 569 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00504 896 Pfam Protein kinase domain 570 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00504 896 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 530 644 - -
Lapu4g00504 896 ProSiteProfiles Protein kinase domain profile. 569 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00504 896 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Lapu4g00504 896 ProSiteProfiles Gnk2-homologous domain profile. 379 486 IPR002902 -
Lapu4g00504 896 ProSiteProfiles Gnk2-homologous domain profile. 274 373 IPR002902 -
Lapu4g00504 896 FunFam cysteine-rich receptor-like protein kinase 10 645 848 - -
Lapu4g00504 896 CDD STKc_IRAK 575 843 - -
Lapu4g00504 896 Gene3D - 131 243 IPR038408 -
Lapu4g00504 896 Gene3D - 27 129 IPR038408 -
Lapu4g00504 896 Gene3D - 273 373 IPR038408 -
Lapu4g00504 896 Gene3D - 380 486 IPR038408 -
Lapu4g00504 896 Pfam Salt stress response/antifungal 139 241 IPR002902 -
Lapu4g00504 896 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Lapu4g00504 896 Pfam Salt stress response/antifungal 280 369 IPR002902 -
Lapu4g00504 896 Pfam Salt stress response/antifungal 392 482 IPR002902 -
Lapu4g00504 896 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 267 891 - -
Lapu4g00504 896 FunFam Cysteine-rich receptor-like protein kinase 25 134 243 - -
Lapu4g00504 896 Gene3D Phosphorylase Kinase; domain 1 529 644 - -
Lapu4g00504 896 FunFam Cysteine-rich receptor-like protein kinase 25 381 486 - -
Lapu4g00504 896 ProSiteProfiles Gnk2-homologous domain profile. 132 243 IPR002902 -
Lapu4g00504 896 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Lapu4g00504 896 Gene3D Transferase(Phosphotransferase) domain 1 645 849 - -
Lapu4g00504 896 SUPERFAMILY Protein kinase-like (PK-like) 553 859 IPR011009 -
Lapu4g00504 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 690 702 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00504 Lapu-Chr4 4848362 4851865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00504 268 896 Receptor kinase-like Gene Family AT4G05200 42.835 1.03e-170 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu4g00504 Pkinase 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00504 - - gmx:100807113 1109.36