Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00486 ATGGAGGAAAGAGAGATTTTTAGTTCTGGGCAGGCTGTTAAGGTTGTCGAGGCCCCCCAGAGCTTCCACGTGGCACTAAACTCCTTGCAGTTTTCTGGGCCCACGGTGGATTCGCCGGCACCGGTGAGTGCTCCGGCGATTACTTCCGCTAGTGCAGAGGGGAAGAAGAAGAGAGGCCGGCCTAGGAAATATGGGCCGGACGGTAATGTGGCGCTGTCGCCGATGCCGATATCGTCGTCGATTCCATTGACCGGAGACTTCTCAGCCTGGAAAAGGGGCAGAGGAAAGCCAGTTGAATCAATCAAGAAGTCTTTTAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGCCCCAGGCGATCAAATTGCATTCTCAGTTGGTGCCAATTTCACACCTCACATACTTGTAGTAAATGCTGGAGAGGATGTTAGTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCAAGCGATCTGCATTCTCTCTGCAAACGGAACAATTTCAAATGTTACACTACGCCAACCAACTTCTTCTGGTGGTACTTTAACATATGAGGGGCGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAACGGGTTTACTAAGAGCAGATCTGGTGGGATGAGCATCTCGTTGGCTGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCTGGTTTGCTGGTAGCTGCTGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTCTTCCTGGTCACCAACTGGAGCAGAAACCGAAGAAGCCGAGGGTGGAGCATGTACCAATGGCTGCCCCTTCCCCTATACATGTCAACCCTGCTCCTGCTGAAGATATAAGAATTGGTCTTGGTGGAGTAAAGCCAATCCTGACATCAGCTGCTTTTCAAATGGACAGCATCTTTGGCAATGGACAACCTTCTGATGATGAAGATCCTTTCCCTGAAGAAGAGCCTAACACAAGCTATGCGGATGCTGGAGTTGCTAGCTAA 993 0.4935 MEEREIFSSGQAVKVVEAPQSFHVALNSLQFSGPTVDSPAPVSAPAITSASAEGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSAWKRGRGKPVESIKKSFKFYEVEGQGAAPGDQIAFSVGANFTPHILVVNAGEDVSMKIMSFSQQGCQAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEQKPKKPRVEHVPMAAPSPIHVNPAPAEDIRIGLGGVKPILTSAAFQMDSIFGNGQPSDDEDPFPEEEPNTSYADAGVAS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00486 330 Gene3D - 131 261 - -
Lapu4g00486 330 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Lapu4g00486 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 252 - -
Lapu4g00486 330 MobiDBLite consensus disorder prediction 34 72 - -
Lapu4g00486 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 273 IPR039605 GO:0003680
Lapu4g00486 330 MobiDBLite consensus disorder prediction 300 330 - -
Lapu4g00486 330 ProSiteProfiles PPC domain profile profile. 123 268 IPR005175 -
Lapu4g00486 330 CDD DUF296 130 244 IPR005175 -
Lapu4g00486 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00486 Lapu-Chr4 4673666 4680369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00486 38 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 58.167 2.82e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00486 - - gmx:102667678 497.278