Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00477 ATGGCTTCAGTGCATCTCCTTCCACTCCTCTTCTCCCTCCTGGCTTTGCTCTTCAACCCAACATGTGTCTATGGCAATGATGAGCTTAGAGCTCTAATGGACCTGAAATCTAGTTTGGATCCGGAGGGGCAGTTTCTGTCGTCATGGAACATGGATGGCAACCCCTGTGGTGGTTACTTTGAGGGAGTGGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGGAAAGGCCTCTCTGGGAGGCTTACACCAGCAATTGCTGAACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTATGGGGAGATTCCGAGGGAAGTTGCAAACTTGACTGAGCTCAGTGACTTGTACCTGAATGTGAATCATTTGTCTGGTGAAATCCCACCTGAGATTGGCAAGATGGAGAATCTTCAAGTTTTGCAGCTTTGTTATAATCAGTTAACAGGAAGCATACCTACACAGATTGGTGATTTGGAAAAGCTTAGTGTTCTTGCCCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTATTCTAGGTGATTTGGAAATGTTGACGAGGCTAGATTTGAGTTCTAATAGTCTCTTTGGTTCCATTCCTACTAAACTAGCCAATCTTCCCTTACTACAAGTTCTGGATGTTCACAACAATTCTCTCTCTGGGAATGTACCCACTGCTTTGAAGAGACTAGAGGATGGATTTGTGTATGAACACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCGGATAATGTCAATCTTACTCGACCTGAACCTTATGGGGCAGGAGTTGGCAGTATCGCTGGAAATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCAAAATCCAAACAAGCCACATCTATTACAGTTGGCATAGTTCTAGCAACAATTGCAATATCAGCAATTGGTATTTTGACCTTCACTATGTATCGGCGACGGAAACAAAAGCTTGGAAGTGCGTTTGATATCTCTGAAGGCCGGCTAAGTACAGATCAAGCCAAGAGTATATACAGGAAAAATGGATCTCCTTTGATTAGCCTCGAGTACTCTAATGGGTGGGACCCTTTGGCTGACAGCAGGAATTTCAACGGGGATAAGCAAGATGTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCAACATACAAAGGGGTTTTAAGAGATGGATCTGCTGTTGCTGTCAAGAGTATCAGTAAAACTAGTTGCAAATCGGATGAAGCTGAATTTTTGAAGGGATTGAACATTTTGACCTCGTTGAGAAATGAGCATTTAGTGAGGTTGAGAGGGTTTTGTTGTTCAAGGGGACGAGGGGAATGCTTCCTGGTTTATGATTTTGTTCCTAATGGAAACCTGACACGCTACCTTGATGTGAAGGAAGGTGAAGGAGAAGTTCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCACACAAAGCAAACAAACCAGCTCTGGTTCACCAAAACATCTCAGCTGAGAAAGTGCTCATTGATAAGCGGTACAACCCAATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTGAAGGGTAGTGCAGCAAAGGGTTACTTAGCTCCAGAATACACCACAACCGGCAGGTTCACAGAGAAAAGTGATGTTTACGCATTTGGAGTGCTTCTTTTCCAGATCATCACAGGGAAACAGAAGATTACAAGCGCAATGCGCCTTGCTGCAGAGTCCTTCACGTTCCAAGAATTTATTGACCCGAACTTGCATGCCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCAAGAATGGCATTACTTTGCTCCCATGAGTCTCAATTTGAGAGGCCAAGTATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGCCTTTGA 2049 0.4373 MASVHLLPLLFSLLALLFNPTCVYGNDELRALMDLKSSLDPEGQFLSSWNMDGNPCGGYFEGVACNEKGQVANVSLQGKGLSGRLTPAIAELKHLTGLYLHYNSLYGEIPREVANLTELSDLYLNVNHLSGEIPPEIGKMENLQVLQLCYNQLTGSIPTQIGDLEKLSVLALQSNQLAGAIPAILGDLEMLTRLDLSSNSLFGSIPTKLANLPLLQVLDVHNNSLSGNVPTALKRLEDGFVYEHNVGLCGVGFSSLKACTASDNVNLTRPEPYGAGVGSIAGNIPETANVKLPCNTTHCQNPSKSKQATSITVGIVLATIAISAIGILTFTMYRRRKQKLGSAFDISEGRLSTDQAKSIYRKNGSPLISLEYSNGWDPLADSRNFNGDKQDVFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAVKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGEGEVLEWSTRVSIVKGIAKGIAYLHAHKANKPALVHQNISAEKVLIDKRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLHAKFFEYEAAKLARMALLCSHESQFERPSMEAIVQELGNCSSCL* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00477 682 Gene3D Transferase(Phosphotransferase) domain 1 489 681 - -
Lapu4g00477 682 FunFam Protein NSP-INTERACTING KINASE 2 381 488 - -
Lapu4g00477 682 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Lapu4g00477 682 FunFam Protein NSP-INTERACTING KINASE 2 138 260 - -
Lapu4g00477 682 ProSiteProfiles Protein kinase domain profile. 410 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00477 682 SUPERFAMILY L domain-like 24 235 - -
Lapu4g00477 682 Gene3D Phosphorylase Kinase; domain 1 380 488 - -
Lapu4g00477 682 Gene3D Ribonuclease Inhibitor 182 287 IPR032675 -
Lapu4g00477 682 FunFam Leucine-rich repeat receptor-like kinase 27 136 - -
Lapu4g00477 682 FunFam Protein NSP-INTERACTING KINASE 2 489 679 - -
Lapu4g00477 682 Pfam Protein tyrosine and serine/threonine kinase 414 675 IPR001245 GO:0004672|GO:0006468
Lapu4g00477 682 SUPERFAMILY Protein kinase-like (PK-like) 388 675 IPR011009 -
Lapu4g00477 682 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Lapu4g00477 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 76 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00477 Lapu-Chr4 4585047 4589244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00477 9 523 Miscellaneous Gene Families AT4G22730 55.810 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lapu4g00477 PK_Tyr_Ser-Thr 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00477 - - vum:124819657 1265.75