Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00453 ATGGCAACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTTTGACGCGTGAGTTGGCGGAGGATGGTTACTCTGGCGTGGAGGTTAGGGTTACGCCTATGCGAACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAAGGAAGGAGAATTAGGGAACTGACCTCAGTGGTGCAGAAGAGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTCTATGCCGAAAAGGTCAACAACAGAGGCCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTAAGATTTGTGATGGAAAGTGGTGCCAAGGGATGCGAGGTTATTGTTAGTGGAAAACTGAGAGCTCAGAGAGCCAAATCCATGAAATTCAAGGATGGGTACATGATTTCTTCTGGACAACCAGTCAAGGATTACATCGACTCTGCAGTGAGACATGTGCTGCTCAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCTCTACCAGATATTGTCACAATCCACACTCCAAAAGAGGATGAATACAACCGTCCTGCCACTGCTACTGGTACTGCTCCTGTTTTGGCCAATGATATTGAGGTCCCTGTTGCTTAA 723 0.4772 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEDEYNRPATATGTAPVLANDIEVPVA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00453 240 Gene3D - 1 91 IPR015946 -
Lapu4g00453 240 CDD KH-II_40S_S3 5 95 - -
Lapu4g00453 240 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Lapu4g00453 240 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Lapu4g00453 240 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lapu4g00453 240 FunFam 40S ribosomal protein S3 93 227 - -
Lapu4g00453 240 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Lapu4g00453 240 Gene3D - 93 219 IPR036419 -
Lapu4g00453 240 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Lapu4g00453 240 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Lapu4g00453 240 FunFam 40S ribosomal protein S3 1 92 - -
Lapu4g00453 240 Pfam KH domain 20 93 IPR004044 GO:0003723
Lapu4g00453 240 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00453 Lapu-Chr4 4410019 4413389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00453 1 222 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 91.031 7.51e-151 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00453 K02985 - gmx:100808705 437.958