Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00452 ATGGCAACTCAAATGAGTAAGAAGATAAAGGTTTTGACGCGTGAGTTAGCGGAGGATGGTTACTCTGGCGTGGAGGTTAGGGTTACGCCTATGCGAACTGAGATCATCATCAGAGCCACCAGAACTCTCGGTGAAAAAGGAAGGAGAATTAGGGAACTGACCTCAGTAGTACAGAAGAGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTATGCCGATAAGGTCAACAACAGAGGCCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTCGGTGCTCTTGCCGTTCGTAGGGCATGCTATGGTATTTTAAGATTTGCAATGGAAAGTGGTGCCAATGGATGCGAGGTAATTGTCAGAGGAAAACTTAGAGCTCAGAGAGCCAAGTCCATGAAATTTAAGGATGGTTACATGATTTCTTCTGGACAACCCGGTGTTATTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCCAAAGGAAAGCAGGGTCCCAAAACTCCCTTCCCAGATATTGTCACAATCCACTCTCCAAAGGAGGAGGAAGAATATGCCCGGCCTGCTGCTGCCACTGTTTTGGCAACAACTGATATTAAGGTCCTTGTTGCTTGA 621 0.4605 MATQMSKKIKVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTLGEKGRRIRELTSVVQKRFKFPENSVELYADKVNNRGLCAIAQAESLRYKLLGALAVRRACYGILRFAMESGANGCEVIVRGKLRAQRAKSMKFKDGYMISSGQPGVIGIKVKIMLDWDPKGKQGPKTPFPDIVTIHSPKEEEEYARPAAATVLATTDIKVLVA* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00452 206 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 7 166 - -
Lapu4g00452 206 Pfam KH domain 10 77 IPR004044 GO:0003723
Lapu4g00452 206 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 83 IPR009019 GO:0003723
Lapu4g00452 206 Gene3D - 148 188 IPR036419 -
Lapu4g00452 206 Gene3D - 77 147 IPR036419 -
Lapu4g00452 206 CDD KH-II_40S_S3 12 79 - -
Lapu4g00452 206 SUPERFAMILY Ribosomal protein S3 C-terminal domain 77 159 IPR036419 -
Lapu4g00452 206 Gene3D - 3 75 IPR015946 -
Lapu4g00452 206 FunFam 40S ribosomal protein S3 3 76 - -
Lapu4g00452 206 Pfam Ribosomal protein S3, C-terminal domain 90 143 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00452 Lapu-Chr4 4407197 4408893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00452 1 191 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 73.991 1.68e-113 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00452 K02985 - gmx:100499737 340.502