Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00447 ATGGCAACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTTTGACGCGTGAGTTGGCGGAGGATGGTTACTCTGGCGTGGAGGTTAGGGTTACGCCTATGCGAACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAAGGAAGGAGAATTAGGGAACTGACCTCAGTGGTGCAGAAGAGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTCTATGCCGAAAAGGTCAACAACAGAGGCCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTCGGTGGTCTTGCTATTGATATGCTGTGTCTAGAAAAGCTTTTGACATTGTTTTTTCAACGAAAGTTGGAAATTGATTTTGGTTAA 414 0.471 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAIDMLCLEKLLTLFFQRKLEIDFG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00447 137 FunFam 40S ribosomal protein S3 1 92 - -
Lapu4g00447 137 CDD KH-II_40S_S3 5 95 - -
Lapu4g00447 137 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Lapu4g00447 137 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Lapu4g00447 137 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 117 - -
Lapu4g00447 137 Gene3D - 1 91 IPR015946 -
Lapu4g00447 137 Pfam KH domain 20 93 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00447 Lapu-Chr4 4365224 4370049 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00447 1 119 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 91.597 2.59e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00447 K02985 - gmx:100795045 223.402