Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00430 ATGACTAAAGAAGATGATGGGAACCGTGGTGATTATGAGCATGACATAGAAATTGAAGGTCTGTTGGATGGGAACGAGGAAAATGGAAGGTACTTTTGGTCAGGGTTGTCTGACAGAAGCCTGGCTCACACAAAGCCACTTCTTGTGAAGAGGACCAACACCACCTCGCAGATTGCTATAGTTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGACTATGAGATTTTTGATAATGAAATATTGAAGCATGACTGGAGGTCCAGGAAGAAGTTTCAGATAATCCAATATGTGGTGCTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGCACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGATTCAAGCTGCTTATGACTACCACTCTGATGTCTAAAAACAGATATCTTGCGGCATTTTTAGGATATGCTGGTGTGAATATATGTTTAGCAGCAGCAGCTGCTGCACTATGTGCTTTCATTGCTCCAGCAGCGGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGTGTGGATGCTCACTATATATTGGCTCCCAGCACCCTTTTTGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGTGCTTGCATAGCTTCTTTATTGGGACAGGGTGGATCTCGCAAGTATCACTTGACTTGCAATTGGCTTAGATATTTCAAGAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGAAGTGCACTTCTTTGGAGGACATTCTTCACAACTGCAGTAGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGAAAATGTGGGCTATTTGGTGAAGGTGGTCTGATAATGTATGATGTTAGTCCAGCCAATATAACATATAGTGCTACTGATATATTTGCAGTACTACTTTTGGGAGCCCTTGGTGGAATTCTCGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGAACATATAGCATCATCAATGAAAAAGGTCCATTTTTCAAAATCTCTCTTGTTGTGACAATTGCTCTTTTGACATCATGTTGTTTTTATTTCTTGCCATGGGTTGCACACTGCATTCCTTGTCCTCCTGATTCAACATCGGTCTGTCCCTCTATTAATGAGTCTGGAGAATACCAAAACTTTCAATGCCCTCCCGGCTACTACAATGATCTTGCCTCCCTTTTTTTGAACACCAATGATGATGCTATTCGTAATCTATTCAGCCCTAAGATAATCAAAGAGTTTCATATTTCCAGTTTGTTTATCTACTTTGCCACAATTTACGGTCTTGGGATAATCACTTATGGTATTGCTATTCCATCTGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTGCCTATGGCCGTCTTATTAGCCGGCTCTTTGAACTGATCACCAAACTTGACAGAGGACTCTTTGCGCTACTTGGAGCTGCTTCCTTCCTTGGTGGAACCATGAGAATGACAGTTTCTATTTGTGTCATATTACTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAGTCTCAAAAACAGTGGCTGACAGCTTCAACAAGGGTGTCTATGATCTAATACTTCAGATCAAAGGACTTCCTTATTTGGAAGCTCATGCAGAACCTTACATGAGGAATTTAGTTGCACGTGATGTTGTTTCAGGTCCATTGATTACCTTTTCTGGCATTGAAAAGGTTGGGAATATATTGCATGCTTTGAATGGTACAGGACATAATGGGTTTCCTGTCATTGATGAACCACCTTTCACAGATTCACCGGAATTATGTGGGCTTGTTCTGAGATCTCATTTACTAGTGTTGCTGAAGGAGAAGATTTTTTCAAATGATAAGAATTTCATAGATCAAAGTATGTTCCAAAGAATTTCTTCTTTAGACTTTGGAAAGGCAGGATCAGGAAAGGGGATCAAACTAGAGGATCTTGACATTGATGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCTCCTTACACCGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTATTTTCCGCCAACATGGACTCAGACACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGACTTTATGCCAGAGCATGTTTTGGGGCTTTACCCTCACATCAAGTCTCACAAACAGCATTTAGGGATGTCAATGAAAAACATTATTTCTTCAGTATTGAAGTGCTGCATTCATTAG 2412 0.4187 MTKEDDGNRGDYEHDIEIEGLLDGNEENGRYFWSGLSDRSLAHTKPLLVKRTNTTSQIAIVGANLSPIESLDYEIFDNEILKHDWRSRKKFQIIQYVVLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLLMTTTLMSKNRYLAAFLGYAGVNICLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCNWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRVAIQFCATGKCGLFGEGGLIMYDVSPANITYSATDIFAVLLLGALGGILGSIYNYLVDKVVRTYSIINEKGPFFKISLVVTIALLTSCCFYFLPWVAHCIPCPPDSTSVCPSINESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLFSPKIIKEFHISSLFIYFATIYGLGIITYGIAIPSGLFIPVILAGAAYGRLISRLFELITKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDLILQIKGLPYLEAHAEPYMRNLVARDVVSGPLITFSGIEKVGNILHALNGTGHNGFPVIDEPPFTDSPELCGLVLRSHLLVLLKEKIFSNDKNFIDQSMFQRISSLDFGKAGSGKGIKLEDLDIDEEEMDMYVDLHPITNASPYTVVETMSLAKAAIIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKSHKQHLGMSMKNIISSVLKCCIH* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00430 803 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 770 - -
Lapu4g00430 803 Gene3D Clc chloride channel 92 590 - -
Lapu4g00430 803 PRINTS Plant CLC chloride channel signature 299 309 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu4g00430 803 PRINTS Plant CLC chloride channel signature 317 324 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu4g00430 803 PRINTS Plant CLC chloride channel signature 441 457 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu4g00430 803 PRINTS Plant CLC chloride channel signature 74 82 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu4g00430 803 PRINTS Plant CLC chloride channel signature 285 293 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu4g00430 803 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 48 774 - -
Lapu4g00430 803 Pfam Voltage gated chloride channel 157 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 ProSiteProfiles CBS domain profile. 717 781 IPR000644 -
Lapu4g00430 803 Pfam CBS domain 721 767 IPR000644 -
Lapu4g00430 803 SUPERFAMILY Clc chloride channel 80 593 IPR014743 -
Lapu4g00430 803 SUPERFAMILY CBS-domain pair 594 768 IPR046342 -
Lapu4g00430 803 FunFam Chloride channel ClC3 92 406 - -
Lapu4g00430 803 Gene3D - 591 773 IPR046342 -
Lapu4g00430 803 PRINTS Chloride channel signature 577 591 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 PRINTS Chloride channel signature 264 283 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 PRINTS Chloride channel signature 169 186 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 PRINTS Chloride channel signature 539 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 PRINTS Chloride channel signature 489 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 PRINTS Chloride channel signature 521 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu4g00430 803 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00430 Lapu-Chr4 4237622 4245143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00430 5 783 Ion Channels AT5G49890 70.716 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00430 K05016 - gmx:100809070 1300.03