Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00418 ATGGCGAAACATGCATCATCTTCTTTCATATCAAAATACAGTTACGACGTTTTTCTTAGTTTTCGTGGTGCAGATACCCGTTTTGGTTTCACTGGTAATCTATACAGTGCTTTGAGTCAAAGGGGAATCTTTACCTTCATCGACGATGAAGCTCTCAGAAAAGGAGAAGAGATCACACCTTCTCTTCGCAAGGCAATCCAAGAATCCAGGATAGCCATCATTATTTTCTCCAAAAACTATGCTTCCTCGTCATTTTGTTTGGACGAACTTGTCCAGATTCATGAGTGTTACAGGAAACAAAAGATGGAGATTTTGGCAGTGTTTTATGATACAGATCCATCATATGTGCGACATCAAAAAGGGAGTTATGAAGAAGCATTGGAAAAACACCAAAGTGGAAGATTCAAAAACCATGTTGAAAAGGTACTAAGTTGGAGATTGGCTTTGTGCGAAGTGGCTGGTTTGTCTGGTTGGCATTTCAAAATTGGTGAAGAATATGAGTATAAGTTCATTCAAAAAATCACAGAAGAAGTATCTGGTAAGCTTAATCGACGTCCCTTGCATATTGCCAATTATCCTGTTGGATTGAAAGCTCGAATGCAACAAATACAATGGCTTTTGGGTGCTGAGTTTGATAACAAAGTGATCATGCTTGGGATTCATGGCATGGGTGGAATAGGAAAATCAACTCTTTCACGAGCTATATATAATTTGATAGCATATCAGTTTGAAGGTTCTTACTTTCTTGCTAGTGTTAGAGAAAAGTCAATTAAGCATGGCCTGGTGCATATGCAAGAGACAATGCTTTCTGAATTAGTCAAAGCTAGGAATATCAAACTCCATGATGTGAATCAAGGAATTCCAATTCTTAAACACAGACTCTGTCGGAAAAAGGTCCTTCTTGTTCTTGATGATGTTGATAAAATGGAACAGTTGCATGCAACTGCTGGAGGACTTGATTGGTTTGGCCCTGGCAGCATCATCATCATAACAACAAGGGATAAGCATTTGTTAGATGTTCATGGAGTTGAAAAACAATATAAGGTTGATGAATTTAACGATGTTGAAGCCCTTGAATTGTTTAGGTGGAATGCTTTCAAGAACAAAGAAATTGATCCCATTTACAAGGAGATCATAAAGCGTGCAATGTATTATGCCAACGGCCTTCCACTGGCTTTGGAAACAATAGGCTCAAACTTGTTTGGTAAAACCTTAGATGAATGGGAATCTGCGTTAGAAACTTATGAGAGAATTCCAAATAGAGATGTTCAGGAAGTTCTTAAAGTTAGCTATGATAGTTTGGATGCCTATGAGAAAGAAATATTTCTTGACATAGCTTGTTTCTTCAGAGGATGCATTCTGAGATATGTTACAAATATGCTCGAGGGAAGAGGTTTTCCTCCAAAATTTGGTATGAGAGTGCTGCAAGAAAAATCTCTCATTAAAATTGACAGATGTGATGGTTATGAAATTGTGATAATGCATGACTTGATTCAATCCATGGGAAAAGAAATAGTCAGACAACAATCAACTTTGCCTCAGAAACGGAACAGGTTGTGGTTTTATAAGGACATTATTAGAGTTTTGGAGGAAAACAAGAAGAATGATAAAATTGAAGCCATGATGTTGGACATGCCAGAAGATCAAGAAATGCAATGGAATCAACTAGTATTTGGAAAGTTGAAAAGCCTACAGATGATGGTTATAAGCAAAAATCCAAGGTTTTCAAAAAGCCTTAAATATCTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGGGATATCCTGTAGGTTCTTTACCATCTAATTTTCATTCAAAGAATCTTGTCAGGCTCGATTTGTCATATAGTAACTTTCAATGGGATAAACCACTTCAGAATTCAGAGGTTTTGAGACACTTGATTCTAAGAGGTTGCAAGTACATTAGACAAATACCAGAAATGTCTGGCTTCCTGAAGTTGACAGAATTATGTGTTTGTAAGTGCATAAATTTGATTAAGATTCATGACTCCTTTGGATCTTTACAGAATCTACAAAGGTTTTGTGCTGAAGGATGTACCAAGTTCAAGATTGGTCCAAAAGGCATGAAGTTGACATCTCTGGAGTATCTATGCCTTCGGGACTGCAGCAATCTTGTTATTTTTCCAGAAATATTGGCACCCATGAAGAATCTAATATATGTTGACTTGGGAGGAACTGCCATAACAAATCTTCCATTTTCAATGCAAAATCTTAAAGGCCTTCAAATCTTATCCTTGGAGAGATGCAAAATGCTTGAAAGTAATTTCATTCAAAAGCTCCCAGTTTTCTTTCCCAATTTGACACAACTACATTTACAAGGCTCAAATTTGACAACCCTTCCTAAATGCATTGAAGAATGTCACTCCTTGAAAATTCTAGAGGTGGTAAATTGCAATAATCTTGAAGAAATTAAAGGTCTTCCACGAAGCACAACTAGATTCTCAGCAGCAAACACTACGGTTGAAGCCAATTCTTCAACTTTGAACATGTTACTCAGACGGACAATTGATTCTACTACAGCAGAAATCATGTACCTAGTGCCAGGCAATCAGATCCCAGAATGGTTTGACCATTCTAGCAACGGAAACTCTCTATGTTTCTGGTTTCGTTATGAACTTCCCTCTCTTACTGTGTGCGGCGTTTTTGGATTTCGGAAACATATCAAGCCTCCTTTTATTGCAAACTTCAATTTCTTTGTTAGAATAAATGATAACAATTCATGTGTTTTTTCTTTCCCTTTGTATTATAAAAGATGCATACCTGAGGATGATCATGTAATCATGCTCAACCATCAAAACATTTCTCGAGATTCAATGAATTTGGATTTTGAAAGAGTGCTTAAGACGAATGAGTGGATTCATGGGAATGTTTCCTTTAAGTTAGCACCAGAAGAAGATTCAAGTAGCTGGGGAGTAATGAAATGGACAGGAGTTTATGTAAACAGGGCATTTACTACAATGGAGAATGTTCGGTTCACAGATCCTTATGCTTATTCTTCCAATAATACAAGTGATGAGAGAAATCAACTTATGTTAATTTGTGAGGAATTTCAATCTGAGTCTGCAGCATCAGACTCCCACAAAGTTGATATGGAAACTCAGAAGAACCAGTTCAGAAAAACTATGACCTTGGAAAATAAGCTACACCTAAAGCTAACAAGGATTAAGAAAATGAAAAAGGATTTAGGAGAGAAACTCAGTGCTATTAAAGCTAACATCTCTGCCATTGAAGCTAACAACTCCTCCATTAAGGCTAAAATCTCTTTGATTAAGGCTAGTTTGTCTGCTCCTCAATCAGAATGGAACAAGGATTCTATGAGAAAAAGCTACATCATTGGAGAAAGAAACACAGACATGAATCAAAGTTGA 3387 0.3696 MAKHASSSFISKYSYDVFLSFRGADTRFGFTGNLYSALSQRGIFTFIDDEALRKGEEITPSLRKAIQESRIAIIIFSKNYASSSFCLDELVQIHECYRKQKMEILAVFYDTDPSYVRHQKGSYEEALEKHQSGRFKNHVEKVLSWRLALCEVAGLSGWHFKIGEEYEYKFIQKITEEVSGKLNRRPLHIANYPVGLKARMQQIQWLLGAEFDNKVIMLGIHGMGGIGKSTLSRAIYNLIAYQFEGSYFLASVREKSIKHGLVHMQETMLSELVKARNIKLHDVNQGIPILKHRLCRKKVLLVLDDVDKMEQLHATAGGLDWFGPGSIIIITTRDKHLLDVHGVEKQYKVDEFNDVEALELFRWNAFKNKEIDPIYKEIIKRAMYYANGLPLALETIGSNLFGKTLDEWESALETYERIPNRDVQEVLKVSYDSLDAYEKEIFLDIACFFRGCILRYVTNMLEGRGFPPKFGMRVLQEKSLIKIDRCDGYEIVIMHDLIQSMGKEIVRQQSTLPQKRNRLWFYKDIIRVLEENKKNDKIEAMMLDMPEDQEMQWNQLVFGKLKSLQMMVISKNPRFSKSLKYLPNSLRVLEWWGYPVGSLPSNFHSKNLVRLDLSYSNFQWDKPLQNSEVLRHLILRGCKYIRQIPEMSGFLKLTELCVCKCINLIKIHDSFGSLQNLQRFCAEGCTKFKIGPKGMKLTSLEYLCLRDCSNLVIFPEILAPMKNLIYVDLGGTAITNLPFSMQNLKGLQILSLERCKMLESNFIQKLPVFFPNLTQLHLQGSNLTTLPKCIEECHSLKILEVVNCNNLEEIKGLPRSTTRFSAANTTVEANSSTLNMLLRRTIDSTTAEIMYLVPGNQIPEWFDHSSNGNSLCFWFRYELPSLTVCGVFGFRKHIKPPFIANFNFFVRINDNNSCVFSFPLYYKRCIPEDDHVIMLNHQNISRDSMNLDFERVLKTNEWIHGNVSFKLAPEEDSSSWGVMKWTGVYVNRAFTTMENVRFTDPYAYSSNNTSDERNQLMLICEEFQSESAASDSHKVDMETQKNQFRKTMTLENKLHLKLTRIKKMKKDLGEKLSAIKANISAIEANNSSIKAKISLIKASLSAPQSEWNKDSMRKSYIIGERNTDMNQS* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00418 1128 Gene3D Ribonuclease Inhibitor 551 694 IPR032675 -
Lapu4g00418 1128 Gene3D Ribonuclease Inhibitor 695 830 IPR032675 -
Lapu4g00418 1128 SUPERFAMILY L domain-like 494 811 - -
Lapu4g00418 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 813 IPR044974 GO:0006952
Lapu4g00418 1128 Pfam NB-ARC domain 200 434 IPR002182 GO:0043531
Lapu4g00418 1128 Pfam TIR domain 15 184 IPR000157 GO:0007165
Lapu4g00418 1128 ProSiteProfiles TIR domain profile. 13 182 IPR000157 GO:0007165
Lapu4g00418 1128 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 158 IPR035897 -
Lapu4g00418 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Lapu4g00418 1128 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 184 - -
Lapu4g00418 1128 Coils Coil 1065 1085 - -
Lapu4g00418 1128 Gene3D - 12 184 IPR035897 -
Lapu4g00418 1128 Gene3D - 352 435 IPR042197 -
Lapu4g00418 1128 Gene3D - 185 349 IPR027417 -
Lapu4g00418 1128 PRINTS Disease resistance protein signature 386 400 - -
Lapu4g00418 1128 PRINTS Disease resistance protein signature 217 232 - -
Lapu4g00418 1128 PRINTS Disease resistance protein signature 293 307 - -
Lapu4g00418 1128 PRINTS Disease resistance protein signature 742 758 - -
Lapu4g00418 1128 SMART till_3 14 155 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00418 Lapu-Chr4 4101773 4106651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00418 194 827 WRKY Transcription Factor Family AT5G45050 31.509 2.31e-73 264