Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00407 ATGAGAAACTCTGAAGCAACAACACGTGTGGGTATGGAGATAGAAGCAACAGCTAGGCCTTCAGGAAATGGTTCCACCCTACCGGGGTTGAGTCCTCTCAGTGAGACCCTTTGGAGAGAGAAGGCCAACCCAGAGATCATTGGAGATGTCTCAGCTAGACTCACATGGAAGGATCTGACTGTGATGGTCACTCTTAGCAACGGTGAGACACAAAACGTTTTGGAGGGTCTAACTGGTTATGCTGAACCAGGAACCTTCACTGCTCTCATGGGACCCTCAGGTTCTGGAAAATCCACTCTCCTTGATGCACTTTCTAGTCGCCTAGCTGCAAATGCCTTTCTTTCAGGCACCATCCTCCTCAATGGACGCAAAGCCAAACTCTCTTTCGGCACTGCAGCCTATGTGACACAAGATGACAACTTGATCGGTACCCTGACAGTGCGAGAAACGATATCATATTCAGCTCGTTTGCGTTTGCCTGATAACATGCCACGGGAAGATAAGAGAGCATTGGTGGAGAGCACCATTGTGGCAATGGGACTGCAAGATTGTGCAGACACAGTGATTGGAAATTGGCATTTGCGTGGGATCAGTGGCGGGGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGGCCAAGGTTGCTTTTCCTTGATGAGCCAACCAGTGGACTTGACAGTGCTTCAGCATTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGGAGAACTGTGATAGCCTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGTTATTTGACCAATTGTACTTGCTTTCTAGTGGCAAAACTGTTTATTTTGGGCAGGCTTCAGAGGCATATGAGTTCTTTGCACAAGCTGGCTTTCCTTGTCCTGCTTTGAGGAACCCTTCTGATCATTTCCTCAGGTGTATCAATTCTGACTTTGACAAAGTCAAGGCCACTCTTAAAGGGTCCATGAAATTGAGGTTTGAGGGAAGTGATGATCCTTTGGACAGGATCACTACTGCTGAAGCAATCAGAACTCTTATTGACTTCTACCGCACTTCTCAGCACTCTTATGCTGCAACACAAAAAGTGAATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCTGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTCTTACACTTTAACCAAACGTTCCTTCATCAACATGTCAAGGGACTTTGGCTACTACTGGCTTAGGCTTGTTATCTACATTGTGGTCACTGTCTGTATTGGAACCATTTATTTGAATGTGGGGACAGGCTACAACTCTATTCTGGCCAGAGGTTCTTGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATCGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGCCACTATGGTGTCACTGCATTTGTCATTAGCAATACATTATCTGCAATGCCCTTCCTGATTTTGATCACTTTTCTCTCTGGAACCATTTGTTACTTCATGGTTCGCCTACACCCTGGCTTTTGGCATTACCTCTTCTTTGTGTTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGCATTGTCCCCAACTTCCTCATGGGCATCATTATTGGAGCAGGAATTCAGGGCATATTCATGTTGGTCTCAGGCTACTTTAGGCTTCCACATGATATCCCAAAGCCAGTCTGGCGCTACCCTATGTCATACATCAGTTTCCACTTCTGGGCACTACAGGGTCAGTACCAGAATGATTTGAGGGGCTTGATATTTGACAACCAGACACCAGACCTTCCAAAGATACCAGGAGAATACATCTTGGAAAAAGTCTTCCAAATTGATGTCAACAGATCAAAGTGGATAAACCTGAGTGTGATCTTCAGCATGATTGTGATCTACCGCATTATTTTCTTTATCATGATCAAAATCAACGAGGATGTGACACCATGGGTTAGAGGGTATTTGGCTAGGAGGAGAATGCAGCAGAAGAGTGGAGCACAGAATACAACTATTGCACCTGATGTTCTCACTCAGTCACCATCTCTCAGAACCTATGTTTCCCCTCCAACAAAATGA 2112 0.4517 MRNSEATTRVGMEIEATARPSGNGSTLPGLSPLSETLWREKANPEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPREDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHSYAATQKVNEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEKVFQIDVNRSKWINLSVIFSMIVIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSPPTK* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00407 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 291 IPR027417 -
Lapu4g00407 703 Pfam ABC-2 type transporter 387 593 IPR013525 GO:0016020|GO:0140359
Lapu4g00407 703 CDD ABCG_EPDR 51 279 - -
Lapu4g00407 703 Pfam ABC-2 type transporter 254 310 IPR043926 GO:0140359
Lapu4g00407 703 Gene3D - 49 292 IPR027417 -
Lapu4g00407 703 SMART AAA_5 83 254 IPR003593 GO:0016887
Lapu4g00407 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 297 IPR003439 GO:0005524
Lapu4g00407 703 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524|GO:0016887
Lapu4g00407 703 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 43 675 - -
Lapu4g00407 703 MobiDBLite consensus disorder prediction 1 30 - -
Lapu4g00407 703 FunFam ABC transporter G family member 11 48 291 - -
Lapu4g00407 703 Pfam ABC transporter 76 225 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00407 Lapu-Chr4 4024645 4030977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00407 84 285 Calmodulin-binding Proteins AT2G36910 30.986 1.66e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00407 K05681 - gmx:100816389 1328.15