Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00400 ATGAGCTTGGTCTTTACCATAAGCTTTTTATATGTGGTCTTGTTTGTGTCATTCAAATCCAACATGGTGCTGTGCATTGAAATTGAGGAATTCTTTCCAGAAGAAAGAGATGCTTTGATTCTCATAAGGGATTCTTTGAATTCATCTGTGAATTTGCATGGGAATTGGACAGGTCCTCCTTGTATAGACAATCTGAGTAGATGGATAGGTATCACTTGCTCAAATTGGCATGTTGTTCACATTGTTCTTGGAGGAGTTAACCTTAGTGGTTATTTACCTCCCACATTCCTTCAAAACATAACTTTCTTGAGCCAACTTGACTTCAGAAATAATGCTCTTTTTGGACCATTGCCAAGTCTCAAGAATTTGGAGTTTTTGGAACAAGCCCTATTATCATTCAATCATTTCTCAGGGTCAATTCCTGTGCAGTATGTTGAACTTATCAGTCTACAAGTGTTGGAGCTGCAAGAGAATTACTTACATGGTCAAATTCCACCCTTTGATCAACCATCATTGACAAGTTTCAATGTGTCATATAATCATCTATCAGGGCCTATTCCTGAAACTTCTGTGCTGCTAAGGTTCCCAGAGAGTTCATATGGCAATAATTCAGATCTCTGTGGAGAGCCATTGGATAAGTTATGTCCTGTTGAACCTCCTGCCCCATCTCCAGCACCATTTCCTGCACCTCCTCCTTTTGTTATGCCTCCAATCCCAGCAGTGAAGCCAAATAAGAGATTTGAAGCATGGACTGTTGCTTTGATTGGTGCTGCAGCTGCACTGATTCTTCTTTCTCTGATCATTATTAGTGCTTTCTTGTTTCGTAAAAGACATAAAAGTGGAAAAGAAGTAAGAAGAAATGATTCTTCTGAGCATGTTTTTGGGGCATGGGCAAACAAGATGGTGGCTTATGCTGGGGGCAGTGATGTTTCTGAAAGATTGGGCAGATTGGAATTTTCTAACAAGAAACTGCCAGTTTTTGACTTGGATGATTTGTTAAGGGCATCAGCAGAAATTCTAGGAAGAGGGAACTTAGGCATTACGTACAAAGCAACACTTGAAACTGGAACTATTGTCGCAGTGAAGAGACTTAACCACATGAATGAACTGAGCAAGAAGGAATTTCTCCAGCAGATACAATTGCTAGGACAGATGAAGCATGAAAATATAGTAGAAATAATCTCCTTTTATCATTCAGAGGAGCAAAAGCTGGTCATATATGAATTTACCTCTGATGGCACTTTGTTTGAACTCCTACATGGGTAG 1266 0.3965 MSLVFTISFLYVVLFVSFKSNMVLCIEIEEFFPEERDALILIRDSLNSSVNLHGNWTGPPCIDNLSRWIGITCSNWHVVHIVLGGVNLSGYLPPTFLQNITFLSQLDFRNNALFGPLPSLKNLEFLEQALLSFNHFSGSIPVQYVELISLQVLELQENYLHGQIPPFDQPSLTSFNVSYNHLSGPIPETSVLLRFPESSYGNNSDLCGEPLDKLCPVEPPAPSPAPFPAPPPFVMPPIPAVKPNKRFEAWTVALIGAAAALILLSLIIISAFLFRKRHKSGKEVRRNDSSEHVFGAWANKMVAYAGGSDVSERLGRLEFSNKKLPVFDLDDLLRASAEILGRGNLGITYKATLETGTIVAVKRLNHMNELSKKEFLQQIQLLGQMKHENIVEIISFYHSEEQKLVIYEFTSDGTLFELLHG* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00400 421 Gene3D Phosphorylase Kinase; domain 1 306 409 - -
Lapu4g00400 421 SUPERFAMILY L domain-like 33 196 - -
Lapu4g00400 421 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Lapu4g00400 421 Pfam Protein kinase domain 337 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00400 421 SUPERFAMILY Protein kinase-like (PK-like) 338 420 IPR011009 -
Lapu4g00400 421 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 420 IPR046959 -
Lapu4g00400 421 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Lapu4g00400 421 ProSiteProfiles Protein kinase domain profile. 334 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00400 Lapu-Chr4 3950469 3952702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00400 66 421 Receptor kinase-like Gene Family AT5G05160 35.641 4.94e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu4g00400 Pkinase 6.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00400 - - gmx:102668068 661.373