Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00394 ATGGCACCCTCGACCCCTCAAGTCATCACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGGGAGCCACTGGTGATGGAGGAAGTGGAAGTGGGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGCCGTAGTGATCTCTCTGCTTGGGAATCTCATGCCATCTTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGCGGGACTGGGAGTGACTGAATTCAAAGAGGGTGACCATGTGCTAACAGTATTCATTGGAGAATGCATGGCATGCAGACACTGTACATCAGGAAAAAGTAACATTTGTCAAGTTTTAGGATTGGAAAGAAGGGGTTTAATGCACAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTGTTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAATCCATTCGGGATGTGCAGTGAAAGTCAGCCCCGATGCACCTCTTGAGAAAATTTGCCTTCTGAGCTGTGGGGTTGCTGCAGGTCTGGGTGCAGCGTGGAATGTTGCTGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTAGGCCTATCCGTTGCTCAAGCTGCAAAACTAAGAGGTGCGTCTAGAATAATTGGTGTTGACAACAATCGACAGAAGTGTGAAAATGCTAAGGCTTTTGGGGTTACAGAAGTTATTGACTCGAATTCCTTTGAAGAACCTATTTCTCAGGTTATTAAGCGGATTACTAATGGTGGAGCAGATTTCTCATTCGAATGTGTAGGGGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGGACTGCTACTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGGTGGAAACCAAAATCTGATCTGCCTTCACTAGTAGAGAAGTATGTCAACAAGGAAATCCAGATTGATGACTACATAACACACAATTTGCCATTTGATGACATCAACAAAGCTTTCAATCTCATGAAGGAAGGAAAGTGTCTGCGTTGTGTTATCCACATGCCAAGATAA 1131 0.4474 MAPSTPQVITCKAAVAWGAGEPLVMEEVEVGPPQPMEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGIVESAGLGVTEFKEGDHVLTVFIGECMACRHCTSGKSNICQVLGLERRGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVIHSGCAVKVSPDAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQAAKLRGASRIIGVDNNRQKCENAKAFGVTEVIDSNSFEEPISQVIKRITNGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLLLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMPR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00394 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Lapu4g00394 376 FunFam Alcohol dehydrogenase 6 14 195 - -
Lapu4g00394 376 Gene3D - 14 369 - -
Lapu4g00394 376 Gene3D - 179 317 - -
Lapu4g00394 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Lapu4g00394 376 FunFam Uncharacterized protein 318 369 - -
Lapu4g00394 376 SUPERFAMILY GroES-like 5 184 IPR011032 -
Lapu4g00394 376 Pfam Alcohol dehydrogenase GroES-like domain 36 156 IPR013154 -
Lapu4g00394 376 SUPERFAMILY GroES-like 325 373 IPR011032 -
Lapu4g00394 376 CDD alcohol_DH_plants 9 373 - -
Lapu4g00394 376 Pfam Zinc-binding dehydrogenase 203 326 IPR013149 -
Lapu4g00394 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 338 IPR036291 -
Lapu4g00394 376 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00394 Lapu-Chr4 3892594 3902296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00394 37 111 Monolignol Biosynthesis Gene Families AT2G21730 37.975 1.76e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00394 K00001 - gmx:100819938 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00394 4 3892594 3902296 Lapu4g00394 4 3892594 3902296 ECH