Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00391 ATGGCACAAAGGGGACTATCTTCTTCTCCTCTTAACTATGCACACACTTATGATGTCTTTCTTAGTTTTCGTGGTGTAGATACAAGAACTGGTTTTACTGGTCATCTCTATAGTGCTTTGTGTCAAAGGGGAATCCTGACCTTCATGGATGATGATGCTTTAAGCAAAGGGGAAGAGATTACACCTTCCCTTCTCAGTGCAATACGAAAATCTAGGATAGCCATAGTTATTTTCTCTAAAAACTATGCATCCTCTACATTTTGTTTAAATGAACTTGTCCAAATCCTTGCGTGTCATACGTCCAAAGAAAATACATGGGTTTGGCCAGTTTTTTATGATGTAGATCCGTCAGAAGTACGCCATCAAACAGGGAGTTATGCAGAAGCATTTGCAAAATATGAACAAAAAAGATTCAAGGATGACCAAGTGAAGGTGCAAAACTGGAGGGGAGAATATGAGCATGTGATTATTAAAAGAATCATTGAAAAGATATCCTGTAAGATTAATCGACCTCTCTTGCAAATAGCTGATTATCCTGTTGGATTGGAAGCAAGGATGAGAAATGTATTGTCACTAATGAATGCTGAGTTTGATACCAAAGTCAAGATGCTTGGGATTCATGGTATTGGAGGAATAGGAAAATCAACTCTTGCACGTGCAATATATAACTTGATAGCACATCAATTTGAAGATTCATGTTTTCTAGCTAATGTTAGAGAAAAGTCATCAACTAGGCAAGGCCTTGTGCAGATCCAAGAGACAATGCTTTTTGAATTAGCAGGGGAGAGAAATATCAAGTTGGGGGATGTGAATCAAGGAATTCCTATATTAAAAGAAAGACTCCATCAAAAAAATGTCCTTCTCATTCTTGATGACATTGACAAAAGGGAACAATTACAAGCAACTGCAGGTGGACCTGATTGGTTTGGTTTAGGCAGCATGGTCATTATAACAACAAGAGATAAGCATTTGTTAGATATTCACGGTGTTGACAAACAGTATGAGGTTGATGTTTTCAATGTTACTGAAGCTCTGAAACTGTTTCGGTGGAATGCATTAAGAAACAAAGTAGTTGATCCAAGTTGTACAGAAATCATAAAGCGTGCAATATACTATGCTGGTGGTCTTCCATTGGCTTTGGAAACAATAGGCTCAAACTTGTTAGGTAAAACATTAGATGAATGGAAATCTGCATTAGATGCATATGAAAAATTTCCAAATAGAGGTATTCAAGAAATTCTGAGAGTAAGCTATGATGGTTTGGAGGAAAATGAGAAGGATATTTTTCTAGATATAGCTTGCTTCTTCAAAGGATGCACAGTGAAAAAAGTTACAGATATGTTAAATGCTTGTGGCTTTCACGCTGAATATGGTATCAGTGTGCTGCGAAATAAATCACTCGTTAACATTTTGATGTCTGGTGAACATGATGGTGAAATTGTGACAATGCATGACTTGATTCAGTGTATGGGAAAAGAAATAGTTAGACAGCGATCAACTTTACCTGAAAAACGCAATAGGTTGTGGTTTTATCAAGACATTTTTTGTGTTTTAGAGAAAAACATGGAAAATGATGAAATTCTAGCAATGTTGTTGGATATGCCCAAGGATGAAGAAGTTCAATGGAATGGAGAGGTGTTTGGAAAATTGAAAAATCTAAGGATGCTTATAAAGAAGAACGGTTCCTTTCAAAGTAGTCCCAAACATTTTCCGAACAGTTTGAAAGTGTTGGAATGGTTGGGATATCCTGCCACTTCTTTACCATCTAATGTTGCTTCAAAGAATCTTGTTATTCTCAATTTGTCTTACAGTTTCTTTCAGTGGGACAAACCACTTCAGAAATCAAAGGTTTTGAGTCAGTTGATCTTCACAGGTTGTAAGAACATAAGGGAAATACCTGATGTGTCTGGTTCCCCAAATTTGACAGAATTGTGCGTTGAAGATTGCATAAATTTGATTAAGATTGATGATTCTGTTGGGTTTCTTCATAAGTTGCTAAGGTTTAGTGCTAAAGGGTGTACCAAGCTGAGGATTGTTCCACATGGCATAAAGTTGACATCTCTGGAATATCTTTGCCTTCGAGACTGCAGCAGTCTTGTTATATTTCCAGAAATACTGGCCCCAATGGAGAAACTAAAATTTGTTGACTTGGAGGGAACTGCAATAGAAAATCTGCCACTTTCCCTGAAAAATCTTAAAGGCCTTCAAAGCATACATCTTAACAGATGCAAAATGCTTGAAAATTATGCACTATCTAACATCATTCAAATGTTGCCAAACTTCTTTCCCTTTTTGAAGACATTGAGATTACGAAACTCAAATTTGACCATCCTTCCGGAGTGCATTGAAGAATGTCACTTCTTAGAATTACTAGACTTGTGTTATTCCAAGCAACTTCGAGAAATTAGAGGGCTTCCACCAAACATAGATGATTTCTTGGCGTATAACTGCAAGTCACTGGAAGCTCACTCCTCAACTTTAAACAATTTACTGAGCCGGGTAGATTTCTCTCGTATTAGTTATTACTTATTAGCCAAAATGTTTTCCAAAAACACCATTCATTTAATGGCATGA 2574 0.3683 MAQRGLSSSPLNYAHTYDVFLSFRGVDTRTGFTGHLYSALCQRGILTFMDDDALSKGEEITPSLLSAIRKSRIAIVIFSKNYASSTFCLNELVQILACHTSKENTWVWPVFYDVDPSEVRHQTGSYAEAFAKYEQKRFKDDQVKVQNWRGEYEHVIIKRIIEKISCKINRPLLQIADYPVGLEARMRNVLSLMNAEFDTKVKMLGIHGIGGIGKSTLARAIYNLIAHQFEDSCFLANVREKSSTRQGLVQIQETMLFELAGERNIKLGDVNQGIPILKERLHQKNVLLILDDIDKREQLQATAGGPDWFGLGSMVIITTRDKHLLDIHGVDKQYEVDVFNVTEALKLFRWNALRNKVVDPSCTEIIKRAIYYAGGLPLALETIGSNLLGKTLDEWKSALDAYEKFPNRGIQEILRVSYDGLEENEKDIFLDIACFFKGCTVKKVTDMLNACGFHAEYGISVLRNKSLVNILMSGEHDGEIVTMHDLIQCMGKEIVRQRSTLPEKRNRLWFYQDIFCVLEKNMENDEILAMLLDMPKDEEVQWNGEVFGKLKNLRMLIKKNGSFQSSPKHFPNSLKVLEWLGYPATSLPSNVASKNLVILNLSYSFFQWDKPLQKSKVLSQLIFTGCKNIREIPDVSGSPNLTELCVEDCINLIKIDDSVGFLHKLLRFSAKGCTKLRIVPHGIKLTSLEYLCLRDCSSLVIFPEILAPMEKLKFVDLEGTAIENLPLSLKNLKGLQSIHLNRCKMLENYALSNIIQMLPNFFPFLKTLRLRNSNLTILPECIEECHFLELLDLCYSKQLREIRGLPPNIDDFLAYNCKSLEAHSSTLNNLLSRVDFSRISYYLLAKMFSKNTIHLMA* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00391 857 ProSiteProfiles TIR domain profile. 15 168 IPR000157 GO:0007165
Lapu4g00391 857 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 768 IPR044974 GO:0006952
Lapu4g00391 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 432 IPR027417 -
Lapu4g00391 857 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 149 IPR035897 -
Lapu4g00391 857 Gene3D - 339 422 IPR042197 -
Lapu4g00391 857 SUPERFAMILY "Winged helix" DNA-binding domain 410 518 IPR036390 -
Lapu4g00391 857 SMART till_3 16 158 IPR000157 GO:0007165
Lapu4g00391 857 Pfam TIR domain 17 164 IPR000157 GO:0007165
Lapu4g00391 857 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 168 - -
Lapu4g00391 857 SUPERFAMILY L domain-like 531 837 - -
Lapu4g00391 857 Gene3D - 169 332 IPR027417 -
Lapu4g00391 857 Gene3D Ribonuclease Inhibitor 684 839 IPR032675 -
Lapu4g00391 857 Gene3D Ribonuclease Inhibitor 541 683 IPR032675 -
Lapu4g00391 857 PRINTS Disease resistance protein signature 280 294 - -
Lapu4g00391 857 PRINTS Disease resistance protein signature 373 387 - -
Lapu4g00391 857 PRINTS Disease resistance protein signature 203 218 - -
Lapu4g00391 857 PRINTS Disease resistance protein signature 683 699 - -
Lapu4g00391 857 SMART AAA_5 200 340 IPR003593 GO:0016887
Lapu4g00391 857 Gene3D - 14 168 IPR035897 -
Lapu4g00391 857 Pfam NB-ARC domain 187 418 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00391 Lapu-Chr4 3880148 3883323 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00391 17 814 WRKY Transcription Factor Family AT4G12020 29.087 2.41e-71 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00391 - - var:108344061 1565.82