Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00387 ATGGAACAAACAGCGTGTGAGGAATCGTTGAAAAACGCTCCAGATTTGAAGTGTGAGCAGGTTCTCGAAACAGTTGATAAATCAATCGCGTGTCCCACTCCTCAAAAGAACAATGAACCCTTGACAATCAAATCCAGAGAGGGACAAACCAATCTTCCAGAAAAATACTCTACGCTTTCGGACTTGTTTGGTCACATGAGTTGTTCGCTTAGATTGTTGCGACTGTTAAAAAAGACTCCCACTTTTCAAAATGTTTGCCGCCTGGTTGAAGTTCTTTCGAAGAGGGAATTCTCCCATGCTCATCTTGCGCAGATGAAGTATATACTCCCCGAAGGTGTATGTATAGATAAGGTGCTTGTTCATGACAAGAAAAGCTTGTGTATGGTGCCTGATATGAAGATCACCTTGAGATTCGAGATTGTGAAAGATAGCTCTGGTGAATCTGCTGATCTGGCTCTTCGGCGATATTTTAGATCTAAACTGTTTGATTTTTTTTCTATGCATCCCGAGGTTTCTCATATTCCAGAAGCCCTGCTGCCTGAGCCTTTTAGCAAGAAAACTTGTAGCTCGAATTGTGAGGATTCACATGTGGCAGAATTTACAGGCCAATCCCTGCATTCTTTAACGGAACTTGGGACAATTTCCAATCAAATCGAAATGATGCCGGAACCTTCTAGCTCAAAAGCTTGTAGCTTGAATTGTGAAGATTCATACGTTGGAGAATTTACAGGCCAATCTTTGGATTATTCAACGGAACTTGTGTCATATTCCAAGCAAAGAGAAACGTTGCAAGAGCAGTTCCCGTTGTATCCGTCTTTTCGTAGACATTTCTCTAGGAAGAATATTGCTGACCGGACAGAAAGGGCACAGTGTTTTTCACCCACAAAAACTTCTCCATCATCTCACGTGGAAAACGAAGAAAGTGAAAAGGCACTGCAGAAAGGAAGTGCACCATTATCTGATCATGTGGATCACCGGAAGGAATCATTTTATACGACTTCTCAACCTAGTATTAATACGCCAGTACATATGATCCGTCCTCCACATTCCGTCACCTGCAATAATTCTGAATCCCCTGACATGAAAAATATCTCCTGTACTGCTGATAGTTTTATGACCGAGACACCTGCCCAGTCAGCACCTGCAAGATTATTGCCCGTTTCTGATGTTAAGCCTCAGTACATGCCTACCCAAGTATCAACGTCTTGTCATAAGCCAGCAAAAAGAGTGCTTGACTTTTCACTCATGGAGGACAATGATGGCTTGGGCATTGGAGTACACAACTTAGAATCCAGCAGAGCTCTACATGAAATTGACCGCTTTCCCGAATCTAGCGGAGGATGCTCTGAGTATTGCTGCAATTCTGTTAGTTCTGCCTCTGTACCTCAAGAGGCAGAACTTGGTTACTCTTTGGAGAAGATTACCGACAAGCAAGCTGGTTTAAATACATGGCACACAAAATCTTCACCGATGCTGGATCTGGTTAATGTCATCCACTCTATATTTCAATCTGTTCAAAGAATTTCCATGACAAAAGAGGAGCTCCTGCATAAGATACTTATCAACAGTTTCGACGTTGTTGACATTGGAGAAGTTGAACAACAAATTGAGTCTTTGGAAAAGTTGGTCCCAGACTGGATCTGCAAGAAATTGATTCCTACCGGAGACACTCTATACTTCATCAATAAAGTGTCAGATTTGGACTCAGTACGATCAAGGGTTTCTAGCAATGAGACTGTTTGA 1743 0.4217 MEQTACEESLKNAPDLKCEQVLETVDKSIACPTPQKNNEPLTIKSREGQTNLPEKYSTLSDLFGHMSCSLRLLRLLKKTPTFQNVCRLVEVLSKREFSHAHLAQMKYILPEGVCIDKVLVHDKKSLCMVPDMKITLRFEIVKDSSGESADLALRRYFRSKLFDFFSMHPEVSHIPEALLPEPFSKKTCSSNCEDSHVAEFTGQSLHSLTELGTISNQIEMMPEPSSSKACSLNCEDSYVGEFTGQSLDYSTELVSYSKQRETLQEQFPLYPSFRRHFSRKNIADRTERAQCFSPTKTSPSSHVENEESEKALQKGSAPLSDHVDHRKESFYTTSQPSINTPVHMIRPPHSVTCNNSESPDMKNISCTADSFMTETPAQSAPARLLPVSDVKPQYMPTQVSTSCHKPAKRVLDFSLMEDNDGLGIGVHNLESSRALHEIDRFPESSGGCSEYCCNSVSSASVPQEAELGYSLEKITDKQAGLNTWHTKSSPMLDLVNVIHSIFQSVQRISMTKEELLHKILINSFDVVDIGEVEQQIESLEKLVPDWICKKLIPTGDTLYFINKVSDLDSVRSRVSSNETV* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00387 580 Pfam DNA replication factor CDT1 like 52 113 IPR014939 -
Lapu4g00387 580 SUPERFAMILY "Winged helix" DNA-binding domain 43 183 IPR036390 -
Lapu4g00387 580 Gene3D - 485 579 IPR038090 -
Lapu4g00387 580 SMART CDT1_2 52 181 IPR014939 -
Lapu4g00387 580 MobiDBLite consensus disorder prediction 285 322 - -
Lapu4g00387 580 PANTHER DNA REPLICATION FACTOR CDT1 34 575 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lapu4g00387 580 Pfam DNA replication factor Cdt1 C-terminal domain 491 547 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00387 Lapu-Chr4 3848118 3852624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00387 494 574 Core DNA Replication Machinery Family AT2G31270 44.444 1.94e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00387 K10727 - gmx:102670055 763.837