Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00360 ATGTCTTCTGCCGGCGGCGACGGTACCTCCGGCGAGCCTCGCCAATACTTCTGCCATCAGTGCAATCGCACCGTCTCTGTTACCCCTTCCCCCTCCTCCGATCTCCTCTGCCCCAATTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCTAACCCTAGCCCTAGCCCGCATCCTTTCTTCCCCGACTTCCCCCTTCCTGGGGCCACCGCCATTCCCTTCCTCTTCCCCGGAGGAGCTGGCCAGCCCTTCGACGATTTCTCTACCCTCTCCGGCACTCGATCTGACGCCGCCACCGCTGATACTGCCCTCGCCCCCTTTGTCCTCCTCCAGAACTACTTGCAAACCCTAAGAACCGGCGGGGGCGGTGGCAACCTTCAACTCGTAATTGAATCCGGCGACCCCGGCGGAGCGTTTCGGTTTCCCGGCATCACCCACGGCGACTACTTCTTTGGAACGGGCCTTGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCGAACCGCTACGGCACCCCGCCGGCTTCCAAGACGGCTGTGGAGGGGCTTCCGGACGTCTCGGTCACCGAGGAGCTGCTTGCATCGGATTCCTCGCAATGCGCAGTGTGCAAAGACACGTTCGAACTCGGTGAAACCGCGAAGCAGATGCCCTGTAAGCATATATATCATGCGGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCCTGTCCCGTTTGTCGGTATGAGCTGCCCACAGACGATCCTGATTACGAGCAGAGGGCTAATCGTGGTAGCGGTGGCGGTAGTGGAGGCGGTAGCGGTGCTACCGGAAGTGGAGTGGCTCCCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGTTCTGGGGATTCGTCTGGTGGCGGAGACAATTCGCAGAGGAGGAGGTTTAGGGTGTCTTTGCCGTGGCCCTTCAGGCCATCTGTTTCTTCTGGTGCTGAGACAAGTAATGTTGGCGGTGCCAACAATGATGACAACAGTAATATCAATAGTGGGGGAAACAATAGTGGGCAATCGAATTCTGGAAACAGGGGGAATCAGAATTTTGAGTCAGAGACCAGACAGGAAGATCTTGATTGA 1101 0.5749 MSSAGGDGTSGEPRQYFCHQCNRTVSVTPSPSSDLLCPNCNGGFLEELEIPNPSPSPHPFFPDFPLPGATAIPFLFPGGAGQPFDDFSTLSGTRSDAATADTALAPFVLLQNYLQTLRTGGGGGNLQLVIESGDPGGAFRFPGITHGDYFFGTGLEELIQHLAENDPNRYGTPPASKTAVEGLPDVSVTEELLASDSSQCAVCKDTFELGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRANRGSGGGSGGGSGATGSGVAPQVNWNLAVGPGGSGDSSGGGDNSQRRRFRVSLPWPFRPSVSSGAETSNVGGANNDDNSNINSGGNNSGQSNSGNRGNQNFESETRQEDLD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00360 366 CDD RING-H2_RNF126-like 199 241 - -
Lapu4g00360 366 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Lapu4g00360 366 MobiDBLite consensus disorder prediction 316 356 - -
Lapu4g00360 366 Pfam Ring finger domain 199 241 IPR001841 -
Lapu4g00360 366 SMART ring_2 200 240 IPR001841 -
Lapu4g00360 366 SUPERFAMILY RING/U-box 184 247 - -
Lapu4g00360 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 245 - -
Lapu4g00360 366 FunFam E3 ubiquitin-protein ligase RING1-like 161 247 - -
Lapu4g00360 366 MobiDBLite consensus disorder prediction 251 366 - -
Lapu4g00360 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 247 IPR013083 -
Lapu4g00360 366 MobiDBLite consensus disorder prediction 263 277 - -
Lapu4g00360 366 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00360 Lapu-Chr4 3659531 3671810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00360 147 253 C3H Transcription Factor Family AT5G01980 52.336 3.03e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00360 K11982 - gmx:100818686 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00360 4 3659531 3671810 Lapu4g00360 4 3659531 3671810 ECH