Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00357 TTCACATATGATGTGTTCCTCAGTTTTAGAGGGGAAGACACGCGTTATGGTTTCACTGGCAATCTCTACAAAGCAGTCTGTGACAGAGGAATCCACACTTTCTTCGATGATGAGGACCTTCAGAAGGGAGAGGAAATCACTCCAGCACTTCTCAAGACAATTCAAGACTCCAGAATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTGACTGCCAGACCAAAGGGCTCTTGGTTATGCCGGTGTTTTATAAGGTAGATCCTTCACATGTAAGACATCAGAAAGGTAGCTATGAAGAAGCATTGACTAAGCATCAAAAGAGGTTCAAAGCTGAGAAGGAGAAGTTGCAGAAATGGAAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTGTCATTTCAAAGACGGTGATGGATACGAGTACAAGTTTATTTCGAGTATTGTGGACTGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTAGAACTAAGGAAGCTTCTAAAAGCTGAATCTGGTGATGGATTCCGCATTATAGCGATCCATGGAATGGGTGGGATAGGAAAAACAACACTCGCTCTAGCAGTTTATAATTTGATTGCTGTCTGCTTTGATGGTTCTTGTTTTCTTGAAAACGTGAGAGAGAAATCAAACAAACATGGGCTAGAACACCTCCAAACCATCCTTCTTACGAAAATACTTGGAAAGAAGGACATCAACTTAGCGAGTGAGCACGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAAGTGCGAGCAGATACAGGCACTGGCTGGAAGCCCTGATTGGTTTGGTCCTGGCAGCAGGATCATCATCACAACTCGAGATACGCAGCCGCTGGCATCACATCAGGTTAAAAGAATATATAAGGTCATCACATTTGAATAA 1020 0.4382 FTYDVFLSFRGEDTRYGFTGNLYKAVCDRGIHTFFDDEDLQKGEEITPALLKTIQDSRIAIVVLSHNYASSSFCLDELATILDCQTKGLLVMPVFYKVDPSHVRHQKGSYEEALTKHQKRFKAEKEKLQKWKMALRQVADLSGCHFKDGDGYEYKFISSIVDWVCHKINPARLHVADYPVGLGPQVLELRKLLKAESGDGFRIIAIHGMGGIGKTTLALAVYNLIAVCFDGSCFLENVREKSNKHGLEHLQTILLTKILGKKDINLASEHEGISMIQQRLQRKKVLLILDDVDKCEQIQALAGSPDWFGPGSRIIITTRDTQPLASHQVKRIYKVITFE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00357 339 Pfam TIR domain 3 165 IPR000157 GO:0007165
Lapu4g00357 339 Gene3D - 178 332 IPR027417 -
Lapu4g00357 339 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 323 IPR044974 GO:0006952
Lapu4g00357 339 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 143 IPR035897 -
Lapu4g00357 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 334 IPR027417 -
Lapu4g00357 339 Gene3D - 1 176 IPR035897 -
Lapu4g00357 339 ProSiteProfiles TIR domain profile. 1 168 IPR000157 GO:0007165
Lapu4g00357 339 SMART till_3 2 141 IPR000157 GO:0007165
Lapu4g00357 339 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 170 - -
Lapu4g00357 339 Pfam NB-ARC domain 191 322 IPR002182 GO:0043531
Lapu4g00357 339 PRINTS Disease resistance protein signature 203 218 - -
Lapu4g00357 339 PRINTS Disease resistance protein signature 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00357 Lapu-Chr4 3650123 3651633 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00357 3 335 WRKY Transcription Factor Family AT4G12020 28.274 3.95e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00357 - - var:108344036 512.301