Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00350 ATGTCTTCCGCTTCCTTAACCTACCATGTTTTCCTCAGCTTCAGAGGGGAAGACACACGCCACGGTTTCACTGGCAATCTCTACAAAGCTCTTACTGATAGAGGAATCCACACTTTCATCGATGATAACGAGCTTCCAAGAGGACACCAAATCACACCGGTCCTTCTCAAGGCAATTCAACACTCCAGGATTGCCATCGTTGTGCTCTCTCGCAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGAAACCATCCTTCACTGTCAGACCAAAGGATTGTTGGTTATACCGGTGTTCTATAAGGTCGACCCTTCTGATGTCAGACACCACAAAGGTAGTTATGGAGAAGCTTTGACTACACTTCAGAAGAGGTTCAAAGATTACAAGAAGTTGCAGAAATGGAAGATGGCTCTCCGTCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGACGGTGATGGATACGAATACAAGTTTATTGGGAGTATTGTGGACTGCGTCTGCCACAACATTAATCCTGCTCGTTTACATGTTGCGGATTACCCAGTTGGACTAGGGCCACAAGTGCTAGAAGTAAGGAAGCTTCTAAATGTAGAATCTGGTGATGGATTCCACATGATAGCGATCCATGGAATGGGTGGGGTAGGAAAAACAACACTCGCTCTAGCAGTTTATAATTTGATAGCTGTCGATTTTGATGGCTCTTGTTTTCTTCAAAACGTGAGAGAAAAATCAAACAAACATGGGCTAGAACACCTCCAAACCATCCTTCTTTCAAAAATACTTGGAGAAAAGAACATCAACTTAGCCAGTGCGCATGAAGGAATTTCAGTGATACAACAAAGGTTCCAGCAAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAAGTGCGAGCAGTTACAGGCACTGGCAGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGATCATCATCACAACTCGAGATACACAACCGTTGGCATCTCATCAGGTTAAAACAACATATAAGGTCAAGACATTGAATAGAAAGGATGCTCTTCAGTTGCTTACATGGAAAGCTTTCAAAACGGAAGAAGTTGATCCAAGTTATGTGGAGGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCACTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAAGTGTGGAACAATGGAAATCTGCTATCAATCAATATAAAAGGATTCCTAACAATCAAATCCTGGAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAATTGACAGATGTTGAAACTATGCTTGGTGCTCTTTATGACGACTGCATGAAACATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAATAGTCGGGACGGAGTAGTTAAATTGCACGACCTGGTTGAGGACATGGGTAGACAAATTGACCAGAAAGAATCACCGAAAGAGGCAGGGAAGCGCAGGAGATTATGGTTACCTAAAGATATAATTCAAGTTCTAAAATACAACACGGGAACTAGTGAAATTGAAATTGTATGTCTGGATTTCTCCACATCTGACAAAAGAGAAGTGGTGGAATGGAATGGAGAGGCCTTCCAGGACATGGAAAACCTCAAAATACTTATTATTAGAAACTGTAATTTTTCCGAAGGTCCCAATTATTTTCCAGAAAGTTTGAAGGTACTGGAATGGCATGGATATCCTTCAAATTGTTTACCATCTAATTTTCACCCCAACAAACTTGTCGTATGCAATTTACCTAACAGTTGCTTTACCTCATTTGGGTTCCATGGCTCATCAAAGGTCTTCGAGAAGCTAACCGTATTGAATTTTGACGACTGCAAACTTTTAAGACGGATACCTGACGTATCTAGTCTCCCAAATCTGGAGAAACTTTCATTTAAAGAGTGTGGGAGTTTAATTGCAGTTCACGACTCAGTTGGTTTTCTGACTAAACTTAAGGTATTAAGTGCTTCAGGATGCGAGAAGCTCGGGAGATTTCCACCTCTCAACTTGACCTCTCTTGAAACTCTTCAACTTTCATATTGTTTGAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGGGACACATAAGGAAACTTAGTTTGGTTAAACTTCCCATAAAAGAATTGCCAGTTTCATTTCAAAATCTTACTGGACTCCACGAGTTACGCGTGGACTGTGATTTTGTTCAGTTAAACAGCGTTGTCTTGACACCTGAACTATCTGAGCTTATCGTTTATAATTGCAAGGAGTGGAAATACGTAAAATCTAAAGAGGGCGAAGAAGAAATGGGTTCAATGGTATCTTCAACTGTAGAATCATTTTGGGCTTATTCTTACAACCTGAATGATGATTTTTTTTCCGAAGGTTTCAAGCAGTTTGCTCAAGTAAGAGAATTATGGCTTGTGAAAAGTAATTTCACATTCCTTCCTGAATGCCTCGGAGAATTTCATAACATGTTTTCTCTTGATGTGAGTGATTGCAAGCGTCTTCAGGAAATTAGAGGGGTTCCACCAAACTTAAAACATTTCAGGGCAATCAACTGTGTATCATTGACTTCCTCGGGTTCAAGCATGTTGTTAAATCAGCAACTTCACGAGGCTGGAGGGACCGAGTTTATCTTTCCAGGAGGAAGTATTCCAGAGTGGTTGGATAAACAAAGCAAGGGACCTTCGATCTCTTTCTGGTTTCGAAATAAATTCCCTGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTACTCGATGAAACCACTTCAGGATTAGTTAGACCCGTGGTGTTAATCAACGGCAAAGTTCAAGAATATCGTTTTCATCGTAAGAGGGGAGAAGTGACGATGTTGGAATTGGATCATATACACCTCTTTGATCTACGAGAGCTACATTTCCATTATGATCTGATGGAAATGCCTCTAGAAAAGGAGTGGAAGCATGTGGAGGTTACGTACGAAGGTTTGTTTGATACCTCATTCATCAAAGCAATGGGAATCCATGCAGTGAAAGAGGAAAGCGGGAGCATGCAGGACATTCGATATGATGATCCTTACACCAACACAAAAGGGTGGCCCTGCAAGTTCTTCATGATTTTTCTTCTTTTGTTTTCATGTTTTTTGTTAGCTCTTATTTTATTTAAAACTCTCATGGCCTACCCAACCCAATAA 3216 0.4073 MSSASLTYHVFLSFRGEDTRHGFTGNLYKALTDRGIHTFIDDNELPRGHQITPVLLKAIQHSRIAIVVLSRNYASSSFCLDELETILHCQTKGLLVIPVFYKVDPSDVRHHKGSYGEALTTLQKRFKDYKKLQKWKMALRQVADLSGYHFKDGDGYEYKFIGSIVDCVCHNINPARLHVADYPVGLGPQVLEVRKLLNVESGDGFHMIAIHGMGGVGKTTLALAVYNLIAVDFDGSCFLQNVREKSNKHGLEHLQTILLSKILGEKNINLASAHEGISVIQQRFQQKKVLLILDDVDKCEQLQALAGSPDWFGPGSRIIITTRDTQPLASHQVKTTYKVKTLNRKDALQLLTWKAFKTEEVDPSYVEVLNRVVTYASGLPLALEVIGSNLFAKSVEQWKSAINQYKRIPNNQILEILKVSFDALEEEEKSVFLDIACCFKGYKLTDVETMLGALYDDCMKHHIGVLVEKSLINSRDGVVKLHDLVEDMGRQIDQKESPKEAGKRRRLWLPKDIIQVLKYNTGTSEIEIVCLDFSTSDKREVVEWNGEAFQDMENLKILIIRNCNFSEGPNYFPESLKVLEWHGYPSNCLPSNFHPNKLVVCNLPNSCFTSFGFHGSSKVFEKLTVLNFDDCKLLRRIPDVSSLPNLEKLSFKECGSLIAVHDSVGFLTKLKVLSASGCEKLGRFPPLNLTSLETLQLSYCLSLENFPEILGEMGHIRKLSLVKLPIKELPVSFQNLTGLHELRVDCDFVQLNSVVLTPELSELIVYNCKEWKYVKSKEGEEEMGSMVSSTVESFWAYSYNLNDDFFSEGFKQFAQVRELWLVKSNFTFLPECLGEFHNMFSLDVSDCKRLQEIRGVPPNLKHFRAINCVSLTSSGSSMLLNQQLHEAGGTEFIFPGGSIPEWLDKQSKGPSISFWFRNKFPAKVLCLLIAPVLDETTSGLVRPVVLINGKVQEYRFHRKRGEVTMLELDHIHLFDLRELHFHYDLMEMPLEKEWKHVEVTYEGLFDTSFIKAMGIHAVKEESGSMQDIRYDDPYTNTKGWPCKFFMIFLLLFSCFLLALILFKTLMAYPTQ* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00350 1071 Gene3D - 183 337 IPR027417 -
Lapu4g00350 1071 Gene3D Ribonuclease Inhibitor 688 887 IPR032675 -
Lapu4g00350 1071 PRINTS Disease resistance protein signature 207 222 - -
Lapu4g00350 1071 PRINTS Disease resistance protein signature 376 390 - -
Lapu4g00350 1071 PRINTS Disease resistance protein signature 687 703 - -
Lapu4g00350 1071 PRINTS Disease resistance protein signature 283 297 - -
Lapu4g00350 1071 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 173 - -
Lapu4g00350 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 435 IPR027417 -
Lapu4g00350 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 857 IPR044974 GO:0006952
Lapu4g00350 1071 Pfam TIR domain 8 168 IPR000157 GO:0007165
Lapu4g00350 1071 Gene3D Ribonuclease Inhibitor 528 687 IPR032675 -
Lapu4g00350 1071 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Lapu4g00350 1071 SUPERFAMILY "Winged helix" DNA-binding domain 412 518 IPR036390 -
Lapu4g00350 1071 Gene3D - 2 180 IPR035897 -
Lapu4g00350 1071 Gene3D - 341 425 IPR042197 -
Lapu4g00350 1071 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Lapu4g00350 1071 SUPERFAMILY L domain-like 543 877 - -
Lapu4g00350 1071 SMART till_3 7 145 IPR000157 GO:0007165
Lapu4g00350 1071 Pfam NB-ARC domain 196 407 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00350 Lapu-Chr4 3626587 3630287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00350 3 745 WRKY Transcription Factor Family AT4G12020 29.351 8.11e-75 270