Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00332 ATGGGTAGAAAGAAAAGAACTGAAGGACCTAGTGGGGGTGAAAGCTCCGAGGCTCAACGCCCTGCTGAAAGAAGTGCGCCGCCCCAACAGCAGGCTGCGGCCTCAGGAGGGACTGGACCCCAAGGAGGTGGCAGAGGCTGGGGTCCCCAAGGAGGACGGGGAGGTTATGGTGGGGGCCGTGGCCGTGGGATGCCTCAACAGCAATATGGCATCCCCCAACAGCAACATGGCGCCCCTCCTGATTATCAAGGTAGGGGACGCGGAGGATCTTCACAACAAGGAGGCCGTGGAGGATATGGTGGTGGCCGAGGTGGTGGTGGTGTGAGTGGTGGCCGAGGCGTAGGTCCTTCATATGGTGGCCCATCTAGGCCTCCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCAATCATATCAAACTGGGGTGAGTCCTCAGCCTGTACCATCTGAGGCCAGTTCTTCCCTGCCGCCTGAACCGGTGGATTTGGAGCCATCAATGGGGCAACTGGTGATTCATTCTGAAGCCACTCCTACCCCTCCTCCTCAAAGCAAATCATCAATGAGGTTTCCCCTTCGACCTGGGAAAGGTAGCTATGGCATAAAATGCATTGTCAAGGCTAATCATTTCTTTGCAGAGTTACCAAACAAAGATCTGCATCAATATGATGTAACAATTACTCCTGAAGTGACATCCAGAGGTGTGAACCGTGCTGTGATGGAGCAATTGGTCAGGCTGTACAGGGAATCTCACTTGGGCAAGAGGCTTCCGGCATATGATGGCCGCAAGAGCCTCTATACTGCTGGGCCATTGCCTTTTATTTCAAGGGAGTTTAGAATTACTCTCATCGATGATGATGAAGGAGCAGCAGGAGGACAGAGGAGAGACCGAGAGTTCAAGGTGGTGATAAAGTTGGCTGCACGAGCAGACCTTCACCATTTAGGACTCTTTTTGCAGGGAAGACAAACTGATGCTCCCCAAGAGGCTCTGCAGGTCCTCGACATTGTACTGCGTGAACTCCCTACTACAAGGTATTGTCCTGTTGGAAGATCATTTTATTCACCTGATCTGGGGAGAAGACAGCCTTTAGGCGAGGGATTGGAAAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCCACTCAGATGGGTTTGTCACTGAACATTGATATGTCCTCGACTGCATTTATTGAGCCACTGCCAGTAATTGACTTTGTTACTCAACTACTGAATAGAGATGTTTCTGCTCGACCACTTTCTGATGCTGATCGAGTGAAGATCAAGAAAGCTCTCAGAGGAATCAAAGTTGAAGTAACACACCGTGGAAACATGAGAAGAAAATACCGAATCTCTGGCCTGACTTCTCAGGCAACAAGAGAGTTGACATTCCCTGTAGATGAAAGGGGAACTATGAAATCTGTTGTGGAGTACTTCTATGAAACATATGGGTTTGTCATTCAACATACTCAGTGGCCTTGTCTACAAGTTGGGAATACACAGAGACCTAATTATTTGCCAATGGAGGTTTGCAAGATTGTGGAAGGGCAAAGATACTCAAAGAGGTTGAATGAGAGACAGATCACTGCTCTTCTGAAAGTTACCTGCCAGCGTCCTGTTGAGAGAGAGCGTGATATCATGCAGACCGTATATCACAATGCATACCATGAAGATCCTTATGCGAAAGAGTTTGGAATCAGAATTAGTGAGAAGCTTGCTCAAGTTGAAGCACGCATCCTACCTGCACCCTGGCTCAAATATCATGATACAGGTAGAGAAAAGGACTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAACAAGAAAATGGTTAATGGGGGTACTGTGAACAACTGGTTCTGCATCAATTTTTCAAGGAGTGTTCAAGATAGTGTTGCCCGTGGCTTTTGCTATGAACTTGCTCAGATGTGTTATATATCTGGCATGGCATTTAACCCTGAGCCAGTCGTCCCTCCAGTCAGTGCTCGCCCTGATCAAGTGGAAAAAGTTCTAAAAACCCGTTATCATGATGCCAAGAATAAGCTTCAGGGCAGGGAGCTTGATTTGCTTATTGTTATTTTGCCTGACAACAACGGATCTCTTTATGGTGACCTTAAACGTATATGTGAGACTGATCTTGGACTAGTTTCCCAATGTTGTCTGACTAAGCATGTGTTTAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTCAAAGTGGGAGGGAGAAACACTGTACTTGTTGATGCGCTTTCACGTCGCATCCCCTTGGTCGGTGACAGACCTACTATTATTTTTGGAGCTGATGTGACTCATCCACACCCTGGAGAGGATTCCAGCCCGTCAATAGCAGCTGTGGTGGCTTCTCAAGATTATCCTGAAATTACAAAGTATGCTGGTTTAGTCTGTGCCCAAGCTCATAGACAGGAGCTCATTCAGGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATAAAAGAACTTCTTATATCTTTTAGGAGGGCTACGGGGCAGAAGCCACAGCGTATTATATTTTACAGGGACGGTGTAAGCGAAGGGCAATTTTACCAGGTTCTACTGTTTGAGCTTGATGCCATTCGAAAGGCTTGTGCATCCCTTGAACCGAACTATCAGCCTCCCGTGACTTTTGTTGTGGTTCAAAAGCGACATCACACAAGGCTCTTTGCCAGCAACCATCATGACAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCTGGCACAGTTGTGGATTCCAAAATCTGCCATCCAACTGAGTTTGACTTTTATCTTTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCACTACCACGTGTTGTGGGATGAAAACAATTTCACTGCAGATGCTTTGCAAACCCTTACCAACAACCTTTGCTATACATATGCTAGATGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCACTTGGCTGCTTTCAGAGCGAGATTTTACATGGAACCAGAGACGTCCGATAGTGGGTCCATGACGAGTGGTGCAGTTGCTGGCCGTGGAATGGGTGGCGGTATAGGTCGGAGTACTCGAGCTCCTGGAGCTAATGCTGCCGTGAGACCACTACCTGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTTTACTGTTAA 3183 0.4744 MGRKKRTEGPSGGESSEAQRPAERSAPPQQQAAASGGTGPQGGGRGWGPQGGRGGYGGGRGRGMPQQQYGIPQQQHGAPPDYQGRGRGGSSQQGGRGGYGGGRGGGGVSGGRGVGPSYGGPSRPPVPELHQATSVQSYQTGVSPQPVPSEASSSLPPEPVDLEPSMGQLVIHSEATPTPPPQSKSSMRFPLRPGKGSYGIKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISREFRITLIDDDEGAAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVYHNAYHEDPYAKEFGIRISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCINFSRSVQDSVARGFCYELAQMCYISGMAFNPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGIGRSTRAPGANAAVRPLPALKENVKRVMFYC* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00332 1060 SMART DUF1785_2 345 397 IPR014811 -
Lapu4g00332 1060 FunFam Argonaute 10 576 749 - -
Lapu4g00332 1060 SUPERFAMILY Ribonuclease H-like 672 1007 IPR012337 -
Lapu4g00332 1060 FunFam protein argonaute 10-like 755 1060 - -
Lapu4g00332 1060 FunFam Protein argonaute-2 391 517 - -
Lapu4g00332 1060 Pfam Glycine-rich region of argonaut 77 178 IPR024357 -
Lapu4g00332 1060 Gene3D - 576 749 - -
Lapu4g00332 1060 SMART PAZ_2_a_3 402 534 IPR003100 GO:0005515
Lapu4g00332 1060 Pfam Argonaute linker 2 domain 538 584 IPR032472 -
Lapu4g00332 1060 CDD Piwi_ago-like 556 1006 IPR045246 -
Lapu4g00332 1060 Pfam Argonaute linker 1 domain 346 396 IPR014811 -
Lapu4g00332 1060 Pfam Mid domain of argonaute 595 670 IPR032473 -
Lapu4g00332 1060 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Lapu4g00332 1060 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Lapu4g00332 1060 ProSiteProfiles PAZ domain profile. 398 512 IPR003100 GO:0005515
Lapu4g00332 1060 Pfam PAZ domain 402 527 IPR003100 GO:0005515
Lapu4g00332 1060 Gene3D paz domain 391 516 - -
Lapu4g00332 1060 Gene3D - 755 1060 IPR036397 GO:0003676
Lapu4g00332 1060 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Lapu4g00332 1060 SUPERFAMILY PAZ domain 203 549 IPR036085 GO:0005515
Lapu4g00332 1060 MobiDBLite consensus disorder prediction 22 37 - -
Lapu4g00332 1060 CDD PAZ_argonaute_like 397 511 - -
Lapu4g00332 1060 MobiDBLite consensus disorder prediction 129 149 - -
Lapu4g00332 1060 MobiDBLite consensus disorder prediction 1 163 - -
Lapu4g00332 1060 Pfam N-terminal domain of argonaute 202 336 IPR032474 -
Lapu4g00332 1060 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 180 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00332 Lapu-Chr4 3451465 3459694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00332 81 1060 Eukaryotic Initiation Factors Gene Family AT1G48410 81.947 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00332 K11593 - gmx:100780375 1855.49