Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00329 ATGGCTAACATGGTCTCTGTTGGTGTTAAGGTAGCTGCTGTTTCTCCACCACCATTAACCATTACAAACAATGCTCTCACTTTCAGTTTCAACCATAAGAGACACTTTCTTCTTCTAAAATGCTCCGAAACCAAGAGCAGAGCAACCTCTTTCTCTTCTTCCCTCTCAATCTCATCATCACCCCTCAGAAACAAAGGTGGTTGTTCTGTGTTGGCGTGTCTACCTGATGCTTCTTCTGAATCTTCAACCTTATCATCTTCCTCTGCTAAACCCTACTCCTCTTTTCCTTCAACTAAGCTTTATGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGGATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAAGAATCTCAAAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACCACAACGGCACAGGGAAGGCACAAGACTGTAA 573 0.4258 MANMVSVGVKVAAVSPPPLTITNNALTFSFNHKRHFLLLKCSETKSRATSFSSSLSISSSPLRNKGGCSVLACLPDASSESSTLSSSSAKPYSSFPSTKLYVSGLSFRTTEESLRNAFKDFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQRHREGTRL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00329 190 Gene3D - 43 186 IPR012677 -
Lapu4g00329 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Lapu4g00329 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Lapu4g00329 190 PANTHER NUCLEOLAR PROTEIN 8 84 185 - -
Lapu4g00329 190 SMART rrm1_1 99 172 IPR000504 GO:0003723
Lapu4g00329 190 SUPERFAMILY RNA-binding domain, RBD 89 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00329 Lapu-Chr4 3406843 3409976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00329 98 179 Eukaryotic Initiation Factors Gene Family AT4G34110 29.268 3.85e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00329 - K13195 gmx:100305561 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00329 4 3406843 3409976 Lapu4g00329 4 3406843 3409976 ECH