Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00328 ATGGAGATGCAGGATCAAATAGAAAGCACACGATCAACCGTATTTGGCTCACTTAGTAACTGCCATTCAAGTGGTGGAAAACAATCTGAAAATGTTGCCCATATACCTTCTGTTGGAAACAGCCATACTCCCAAGGTCAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAACATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTTTCTAAGGTTGTTAGGGAATCTGAGGGCAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCACTCCATCCATATCCCCGTAAATCAGTTGATGCTTTCAAAGGACACACCATACCAAATGAAACAGAAACATCTCAATCCACGAACCTGTTGGTTGCCGAGAAAGACACCCGATCTCCTACCTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGATCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCTGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCTCCAGCTTCTGTTCCTTTATCCACTGTTTCTAACCCAAACATGTGCATGAAGCCCGAGTTCAGTTCCAAGGAAACTGAATATGTTATAGAAGATTCTGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGGAGACAATCGGAAGTCGCAGAACATAGATGATGATGGTAAGGCAATAACTGTGAAGTGTGATGAAGTGGATGATGTTGAGAATGAGAAGCCTGGCCAATCAACCGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTAGTGGCAACTGGCCCATAACACCTGATTCTGATGGAGCTGATCACAGCGAAGAGCCACCGAAGGAGAACATGTGCCTCAGTGAAAGTGTACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTTCCAGCTTTCTGCGTCGGCCCATGCAATCAGATCCTAAATCCCATGCCTCTTAGGCCCTCTTTGAAAGCGAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACCGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTCAAAAATATCAAGGGGCAGGAGCTGCACCCCAGAAGTCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTAGCTGAAAGAGATGGAAATTCTTTCATTGCAGCCTTGGAAGAGAGGGAGGGGCAACGAGCTCGTGTGTGCTCGTAG 1428 0.4447 MEMQDQIESTRSTVFGSLSNCHSSGGKQSENVAHIPSVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVDAFKGHTIPNETETSQSTNLLVAEKDTRSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSTVSNPNMCMKPEFSSKETEYVIEDSANMPQTTSIKLFGRTVSMGDNRKSQNIDDDGKAITVKCDEVDDVENEKPGQSTEQVDTQLSLGLVSGNWPITPDSDGADHSEEPPKENMCLSESVPDASFPQWSLYQGLPAFCVGPCNQILNPMPLRPSLKARAREEESCCTGSNTESVCDMENQGKNSDAVDSKCQKYQGAGAAPQKSARGFVPYKRCLAERDGNSFIAALEEREGQRARVCS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00328 475 FunFam protein REVEILLE 6 isoform X1 58 106 - -
Lapu4g00328 475 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Lapu4g00328 475 Gene3D - 58 105 - -
Lapu4g00328 475 MobiDBLite consensus disorder prediction 209 242 - -
Lapu4g00328 475 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lapu4g00328 475 MobiDBLite consensus disorder prediction 111 135 - -
Lapu4g00328 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Lapu4g00328 475 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Lapu4g00328 475 PANTHER SWI/SNF COMPLEX-RELATED 29 306 - -
Lapu4g00328 475 MobiDBLite consensus disorder prediction 1 51 - -
Lapu4g00328 475 MobiDBLite consensus disorder prediction 330 352 - -
Lapu4g00328 475 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Lapu4g00328 475 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Lapu4g00328 475 MobiDBLite consensus disorder prediction 1 48 - -
Lapu4g00328 475 CDD SANT 58 101 IPR001005 -
Lapu4g00328 475 SMART sant 55 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00328 Lapu-Chr4 3401952 3406053 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g00328 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00328 - - vum:124836796 852.432